Anolis carolinensis (green anole): 100566478
Help
Entry
100566478 CDS
T01608
Symbol
rad50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03440
Homologous recombination
acs03450
Non-homologous end-joining
acs04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100566478 (rad50)
03450 Non-homologous end-joining
100566478 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100566478 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acs03032
]
100566478 (rad50)
03400 DNA repair and recombination proteins [BR:
acs03400
]
100566478 (rad50)
DNA replication proteins [BR:
acs03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100566478 (rad50)
DNA repair and recombination proteins [BR:
acs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100566478 (rad50)
BRCA1-C complex
100566478 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
100566478 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
UPF0231
TolA_bind_tri
AAA_29
DUF2703
MdcE
Motif
Other DBs
NCBI-GeneID:
100566478
NCBI-ProteinID:
XP_003217435
Ensembl:
ENSACAG00000012723
UniProt:
G1KMS1
LinkDB
All DBs
Position
2:complement(127654367..127704034)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIDKMSILGVRSFGIEDKDKQVISFFNPLTILVGPNGAGKTTIIECLKYVCTGDFPPG
TKGNSFVHDPKVAHETDVRAQIRLQFRDVNGELLAVQRSMVCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQAQRVKECQVELRYLKQNKEKAHEIQNQLSNREAQLAASKEN
VRSIENQLEPLKNRLTEIELNLVKVMKLDNDIKALESRKKQMEKDNQDLQQKMEKVFQGT
DEQLREMYQNHQKTVREKERRLTDCQRELERANKECQRFNREKSELLVEQGRLQVQADRH
QQHISTRDSLIQSLAAQLELEGFKRAPFNERQINSFHKLVKERQDKDKEAADQLTREFEE
KEATKQKQIDEIRDKKTGLERTIELKSDIQSKKRLEVKNLKQELQQLEGSSDRLLEIDQE
LAKANHELDDAEKNCKVDILEKEIKELQKEKSDLDGILRKLDKEMEQLNLNTTIITQMDM
LKKDKADKEEQIRKIKSRHNEELISLLGYFPNKRQLEDWLHSKMKEINQTRDRLAKLNKE
LVSVEQNKNHISTELKKKEEQLSSYEEQLFDVCGSQDFESDLYRLQEEIEKTSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFGTESELQEVIDDLQKKLRLAPDKLKTTESELK
RREKRRDEMMSLKPVRQTISELQEKDIPDLRNKLQALNREIQRLKGEIEEQETLLATIMP
EEESAKACLQDITLMERYQTDLRDVERKIAQHSTKLEGVDLGRTLLQVSQEKQEKKHQWD
TVTGKIELKQTLKQDQQSQVQSLKSAVNELKAEKLQLCSRLQHRQQLEDQTVELTTEVQS
MNREIKEAKEQISPLETTLIKLQQEKEALMNKKNTSCRATQEKINDIKEKVKNINCYVKE
IENYIQEGKEEYKQQKESELDQVKVQLEECEKKKEKINKETGTIRQDIDTQKIQERWLED
NLTLRKRNEDLKEVEDNIKQYRKEMGEMHVPQLKKDREHLEGRIEELKRNHSLALGRQHG
FEEEILRYKKELRDPQFKDAEEKYREMMIVMRTTELANKDLDIYYKALDQAIMTFHSMKM
EEINKTIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAESFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLSRSEYVEKFYRIKKNLEQCSEIVKCNVTSLGSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggatagataaaatgagcatccttggggtgcggagctttggtattgaggacaaa
gacaagcaagtgatcagtttctttaatcctttaaccatcttggtgggtccaaatggtgct
ggaaaaacgacaatcatagaatgcctcaagtatgtttgcactggggacttccctcctggc
accaaaggaaattcatttgtccatgacccaaaagttgcccatgaaacagatgtcagagct
cagattcggcttcagtttcgtgatgttaatggggagcttctagctgtccaacgatccatg
gtatgcactcagaaaggaaagaaaacagaatttaaaactcttgaaggagtcatcaccaga
acaaaacatggagaaaaggtcagtctgagctccaaatgtgcagaaatcgaccgagagatg
atcagtgcccttggtgtttccaagtctgtgcttaacaatgtcatcttctgccaccaagaa
gaatccaattggcctctaagtgaaggaaaggctctgaaacaaaaatttgatgagatcttc
tcagcaacaaggtacattaaggctttggaaacacttcgtcaggtacgtctgaagcaagcc
cagcgggttaaagagtgtcaggtagagctgaggtacttgaaacagaacaaagaaaaagcc
catgaaattcagaaccagttgagtaacagagaagctcagttggctgcctccaaggaaaat
gtcaggtctattgagaaccagcttgaacctctaaagaatcgtctgacagaaatagaactg
aatcttgtgaaagtaatgaaacttgacaatgacattaaagctctggaaagtcggaaaaag
cagatggaaaaggataatcaagatttgcaacaaaagatggaaaaggtttttcaaggaact
gacgaacaacttagagaaatgtatcaaaaccaccagaaaactgtgagagaaaaagaaagg
agattaacagattgtcagagggagctggagagggcaaacaaagaatgccaaagattcaat
agagaaaaatcagaactattggttgaacaaggtcgccttcaagtgcaagcagatcgccac
cagcagcatattagtacaagagattccttaattcagtctttggcagctcagttagaactg
gaaggctttaaaagagcaccttttaatgaaaggcaaatcaacagttttcacaagcttgtg
aaggaaagacaggacaaagacaaggaagcggctgatcagttgacgagagaatttgaggag
aaggaggcaacaaagcagaagcaaatcgatgaaataagggataaaaaaactggacttgaa
agaactattgagctgaagtcagacattcagagtaaaaaaagacttgaagtaaagaacctg
aaacaagaattacaacaactagaagggtcttcggatagacttctagagatagatcaagaa
cttgccaaggcgaatcatgaactagatgatgctgaaaagaactgtaaggttgacatcttg
gaaaaagaaataaaggagcttcaaaaagagaagtcagatttagatggcattctacgaaaa
ctggataaagagatggaacagttgaacttaaatacaacaattataacccaaatggacatg
ctgaagaaagataaagctgacaaagaagagcaaatcagaaaaataaagtccagacacaat
gaagagttaatctccttacttggctatttcccaaataaacgacagcttgaagattggctt
cactctaaaatgaaagaaattaatcagacaagagacagacttgccaaactcaacaaagaa
cttgtttcagtggagcaaaacaaaaatcatattagcaccgaattaaagaagaaagaagag
cagctgtccagttatgaagaacagctttttgatgtctgtggaagccaggattttgaaagt
gatctttacagacttcaagaagaaattgaaaaaacatccaagcagcgagccatgcttgct
ggggccacggcagtatattcgcagttcatcacacaattaacagatgaaaaccagtcttgt
tgcccagtttgccagagggtctttgggacagagtcagaactgcaggaagtgatagatgat
cttcagaagaaactgcgccttgctccggacaaactgaagacaaccgagtcagagcttaag
aggagagagaagagacgagatgaaatgatgtcgctcaaacctgtcaggcaaaccatatcg
gaactccaagaaaaggacatacccgacttaaggaataagctgcaagctctcaacagagag
atacagcgtcttaaaggtgaaatagaagaacaagaaacgctcttggcaactatcatgcct
gaggaagaaagtgctaaagcatgtctccaagatattacacttatggaaaggtatcagact
gatctaagggatgttgagagaaaaattgctcagcattctactaagttagagggtgtggat
ttgggtcggacacttctacaagtgagccaggaaaagcaagagaaaaagcatcagtgggat
acagttactggcaaaattgaattgaagcagactcttaaacaagatcagcaaagccaggtc
cagagtctaaagagtgcagtgaatgagcttaaagcagagaaacttcaactctgtagccgt
ttgcagcatcgacagcaactggaagaccagacggtggagctgacaactgaggtgcagtca
atgaacagggaaatcaaggaagcaaaggagcagatctcccctttggaaacaactttaata
aaactgcaacaagaaaaagaagcactgatgaacaaaaagaacacaagttgcagagcaaca
caggagaagataaatgacattaaagaaaaggttaaaaacatcaactgctacgtaaaagag
attgaaaattacatccaagaaggaaaggaagaatacaagcagcaaaaggaatctgaactt
gatcaagtcaaggtccagctagaagaatgtgagaaaaagaaagagaagataaataaagaa
actggaacaattaggcaagacattgatactcagaagattcaggagcggtggttagaagat
aatctaactttaagaaaaagaaatgaagatctaaaagaagttgaagacaacatcaagcag
tatcggaaggagatgggtgaaatgcatgtcccgcagctaaaaaaggaccgtgagcattta
gaggggagaatagaagaactgaaaagaaatcatagcttagcccttggccgtcagcatgga
tttgaggaagagattcttaggtataaaaaagagctgagagatccacagtttaaagatgct
gaagagaaatacagagaaatgatgatagttatgagaacaacagaactggcaaacaaggat
cttgacatttactacaaagctctagatcaagcaataatgacatttcacagcatgaaaatg
gaagaaatcaacaaaacaattcgtgatctgtggcggagtacctacagaggacaagatatt
gaatacattgaaattcgatctgatgcagatgagaatgtttctgcttctgacaagaggagg
agctacaattacagagtagtaatgataaaaggagacactgctttagacatgaggggcaga
tgcagtgcaggccaaaaggtcctcgcttccctcattatccgccttgctctagcagaatct
ttttgtctcaactgtggcattctggcccttgatgagcccaccaccaaccttgacagggag
aatattgaatctcttgcacatgctttggttgagataatcaaaagtagatcccagcaacga
aactttcagctacttgtgattacacatgatgaagattttgtggaacttttgagtcgttct
gaatatgtggaaaagttctacagaattaagaaaaaccttgaacagtgttctgaaattgtg
aaatgtaatgtcacctctttgggatcatatcttcattag
DBGET
integrated database retrieval system
