Anolis carolinensis (green anole): 100567412
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Entry
100567412 CDS
T01608
Symbol
upf2
Name
(RefSeq) UPF2 regulator of nonsense transcripts homolog (yeast)
KO
K14327
regulator of nonsense transcripts 2
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03013
Nucleocytoplasmic transport
acs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100567412 (upf2)
03015 mRNA surveillance pathway
100567412 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100567412 (upf2)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100567412 (upf2)
mRNA cycle factors
P-body specific factors
100567412 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100567412
NCBI-ProteinID:
XP_003226183
Ensembl:
ENSACAG00000009259
UniProt:
H9GF04
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Position
Un
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AA seq
1271 aa
AA seq
DB search
MPAERKKSTSMEEKETSLSNKDKEFGDRRSVSSRDKPKEDVRLGMKREMLKSPDDKKKKL
EEEKRKKEEKERKKKDDEKVKSEEEQKKKEEEEKQKLEEEEKMKQEEELKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKMPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRET
HTHVSVVISFCRHCGDDIAGLVPRKVKGAADKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPVPEEHGPGIDIFTPGKPGEYDLDGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKEDTKELKEAKENRDVSGTEDLELDLENLDINDDTLELDCGDETE
DLTKKLLDEQEQEDEETSTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWHDPEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGTPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESVRQVQELEREFLIKLGIVNDKDSKD
SMTEGENLEEDEEEEEGGVEIEEQSGNESEINDPEEEEGSENDDEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgaacgtaagaagtcgacaagcatggaagaaaaagaaacatcattaagtaat
aaagataaggagtttggtgacagacggtcagtgagcagcagggacaagcccaaagaggat
gtcaggcttggcatgaagagggagatgcttaaatcacctgacgataaaaagaaaaaactg
gaggaggaaaagaggaaaaaagaagagaaggagcgtaagaaaaaagatgatgagaaggtt
aaatctgaggaagagcagaaaaagaaagaggaggaggaaaagcaaaagcttgaagaggaa
gagaaaatgaagcaagaggaagaactaaagcggcaacaagaagaggctgctgctcagctt
aaagagaaagaagaggcacaccaactccaccaggaagcttgggaacgccaccaggcaaga
aaggaacttcgtagcaaaaaccagaatgcaccagatagtcgccctgaagagaacttcttc
agcagactggattcaagcctcaagaaaaatactgcctttgtgaaaaagttaaaaactatc
acagaacagcagagagactccttgtcccacgattttaatgggctcaatttaagcaagtac
attgcagaggctgttgcttccatagtggaagcaaaactgaaaatatcagatgtaaactgt
gcggtgcatttgtgttccttgttccaccagcgttatgctgactttgctccgtcacttctg
caggtatggaagaaacattttgaagcaaggaaagaagagaaaatgcccaacattactaaa
ctacgaacggatttgcgattcattgcagagctgacaatagttgggattttcacagataag
gaaggcttgtctttaatctacgaacagctaaagaacattattaatgcagatcgggaaacc
cacacccacgtttcagtggttattagtttttgcaggcattgcggagatgatattgctggt
ctggtaccaagaaaggttaaaggtgcagcagataaatttaacttgagttttcctcccagt
gaaataattagcccagagaagcagcaacctttccaaaatctgctaaaggagtactttaca
tccttgaccaaacatctgaaaagggaccacagggaactacaaaatattgaaagacaaaac
aggcgtattttgcactctaaaggggaattaagtgaagatcgacataaacagtatgaagaa
tttgccatgtcctatcagaagttgttggcaaactctcagtctctagctgatcttctggat
gaaaatatgcctgatcttccacaggagaagccagtaccagaagaacatgggcctggcatt
gacatttttacccctggcaagcctggtgaatatgacttagatgggggcatctgggaagat
gaagatgctcgaaatttctacgagaatcttattgacttgaaagcatttgtgccagcaatc
ttgttcaaggataatgaaaagtgttcacagaacaaggactcaagcaaagaagatactaaa
gagttaaaagaagctaaggaaaacagagatgtgtctggtactgaagatctggagttggac
ctggagaatttagatatcaacgatgacaccctcgagttagactgtggtgatgaaacagaa
gatctcacaaaaaagcttcttgatgaacaagagcaagaagatgaagaaaccagtactggg
tctcacttgaagcttattgtagatgctttccttcagcaactcccaaattgtgtaaataga
gacctaatagacaaggctgcaatggatttttgcatgaatatgaacacaaaggccaacaga
agaaaattagttcgggctctttttattgtacctcggcaaaggctagatttgctacctttt
tatgcaagattggtgggcacattgcatccctgtatgtctgatgtagccgaggacctctgt
tccatgctgaaaggcgacttcaggtttcatgtgagaaagaaggaccagatcaacattgag
acaaaaaataaaactgtacgattcattggcgagcttactaagtttaaaatgttctccaaa
agtgacactctgcattgcttaaagatgcttttgtctgacttctcacaccatcatattgaa
atggcatgtacgctgttagaaacctgtggtagattcctcttcagatcgccagaatcccat
ttaagaacgagtgttcttttggaacagatgatgcggaaaaaacaagcaatgcacctagat
gcccggtatgtcacaatggtggaaaatgcctactactattgcaatcctcctccagctgag
aaaacagtgaaaaagaaacgtcctcctctccaggagtatattcggaagctcctttacaag
gatctttctaaggtcacaactgagaaggtcctgagacagatgcgcaaattgccctggcat
gaccctgaagtgaaagactatgttatatgttgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaaccttttagcagggctggtactttaccaagaggatgtt
ggaattcatgtagtggatggtgttctagaggacattcggctgggaatggaggttaatcag
ccaaaatttaaccagcggaggatcagcagtgccaagttcctgggtgagctgtacaattac
agaatggtagagtcagcagtaatatttcgaacactgtattcctttacatcatttggtgtg
aactctgatggtactcctagcccacttgatcctccagaacatcttttcagaatccggctg
gtctgcactatccttgatacttgtggacagtactttgataggggatcgagcaaacggaaa
cttgattgcttcttggtctattttcagaggtatgtttggtggaagaaaagcctggacgtt
tggacaaaagatcacccattccctattgatattgactatatgatcagtgatacattagaa
ctactgagaccaaagataaaactctgcaattctctggaagaatctgttaggcaggtacaa
gaactggaaagggaattcttaatcaaactaggcattgtgaatgacaaggattctaaagat
tcaatgacagaaggagagaatctagaggaggatgaagaagaagaggaaggaggagttgag
atagaagaacaatcaggaaatgaaagtgaaataaatgacccagaggaagaggagggctct
gaaaatgatgatgaagagggtgaagaagaggaagaagaaaatacagattatcttacagac
tctaataaggagaatgaaactgatgaagagaatactgaggtaatgattaaaggtggtgga
cttaaacgtgttccttgtgctgaagatgaagattttattcaagcactggacaaaatgatg
ctggaaaatttacagcagaggagtggagagtctgtgaaagtgcaccagttagatgttgca
atccccttgcatctcaagagccaactcaagaaaggtccaccattgggtggtggggaaggg
gaatctgaatctggagacacaatgccttttgtcatgttaacccgaaaaggcaacaagcag
cagtttaagatactaaatgtgccgatgtcctcccaactggctgcaaatcattggaatcag
caacaagccgagcaagaggagagaatgagaatgaaaaaactgacactggatatcaatgaa
cggcaggaacaagaggactatcaggaaatgatgcagtccctggctcagcggccagctcca
gcaaatactaatcgagaacggcggcctcgttatcagcatccaaagggagcacctaatgct
gatctaatctttaaaactggtggaaggagacgttga
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