Ananas comosus (pineapple): 109723886
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Entry
109723886 CDS
T12126
Symbol
LOC109723886
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
acss
Ananas comosus (pineapple)
Pathway
acss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109723886 (LOC109723886)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acss03041
]
109723886 (LOC109723886)
Enzymes [BR:
acss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109723886 (LOC109723886)
Spliceosome [BR:
acss03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109723886 (LOC109723886)
Complex B
109723886 (LOC109723886)
Complex C
U2 SnRNP specific factors
109723886 (LOC109723886)
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NCBI-GeneID:
109723886
NCBI-ProteinID:
XP_020107970
UniProt:
A0A6P5GR81
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Position
LG18:8031010..8035318
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AA seq
780 aa
AA seq
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MSKRKFGFEGFSINRPATYSFERSQAPQRLYVPPSSRGGSNHDNYEDNDLDNIDYEQADD
AAAADGRSGGDADEIDPLDAFMEGINEEIRAPPPPPPPHGAAKEKVDRYVDEDDDDPMES
FLRAKKDVGLALAADALHAGYNSDEEVYAAAKAVDAGMIEYDSDDNPIVLDKRKIEPIPA
LDHSAIEYDQFNKDFYEEKPSISGMSEQDVADYRKSLAIRVSGFDVSKPIKLFEDCGFST
ALMNAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEIE
KEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKHDQFKELKAGCEIVVA
TPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP
YKVERLAREILTDPIRVTVGEVGRANEDITQLVHVIPSDAEKMPWLLEKLPSLIDDGDVL
VFASKKATVDEIESQLVQKGFKVAALHGDKDQASRMDTLQKFKSGIYHVLVATDVAARGL
DIKSIKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITLKEARFAGELVNSLIAAG
QDVSVELMDLAMKDARFRSKRDQRKGSGGKKGGGRGKGGGGGGGGSGRGVRGVDFGLGIG
YKPEESNATSQPAPGRSAAVNSLRTGMMQQFKSNFVAAASSSQNDNITPSGSAPSARPVL
RGFVSGGMIGGEAAYKTQPVAPFNPPSKPEGSTNENGNKKNPDSSRDRPRERKRPSGWDR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgagggcttcagcatcaatcgccccgccacctacagc
ttcgagcgctcgcaggccccgcagcgcctctacgtgcccccgtcctcgcgcgggggcagc
aaccacgacaactacgaggacaacgacctcgacaacatcgactacgagcaagccgacgac
gccgcggccgccgatggccgcagcggcggcgacgccgacgagatcgaccccctcgacgcg
ttcatggagggcatcaacgaggagatccgcgccccgccaccgccgccgccgccgcacggg
gcggcgaaggagaaggtggataggtacgtggacgaggacgacgacgaccccatggagagc
ttcttgagggcgaagaaggacgtgggcctcgcccttgctgcggacgcgttgcacgcgggg
tacaattcggacgaggaggtgtacgcggccgcgaaggccgtcgacgcggggatgatcgag
tacgattccgacgataacccgattgtgttggataagaggaagatcgagccgattccggct
ctggatcatagcgcaattgagtatgatcagtttaacaaggacttctatgaagagaagccc
tctatatcaggaatgagcgaacaggatgtggcagattacaggaaaagcttagcaattcgt
gtttctggttttgatgtatcaaagccaatcaaactctttgaagattgcgggttctctact
gctttgatgaatgctatttccaagcagggctatgaaaagccaacaccaatacagtgccaa
gctttacctatagtactgtctggtagagatattattggcattgcaaaaacaggttctggt
aaaactgctgcatttgtactccctatgattgttcacattatggaccagcccgaaattgaa
aaagaagaaggtccaattggggtgatatgtgctcccaccagggaattggcgcatcaaata
tatctagaagcgaaaaagtttgcgaagccttacaatctacgagttgccgctgtctatggt
ggtgtttcaaagcatgaccaatttaaagagcttaaagcaggttgcgaaatagttgttgct
actccagggagattaatagacttgctgaagatgaaagccttaaagatgtttagggcaacc
tacctggtgctcgatgaagctgaccggatgtttgaccttgggttcgagccgcaaatacga
tctatcgttggccaaatcagaccagaccgacagactcttcttttctctgcgaccatgccg
tacaaagtcgagcgcttagctagagaaattcttacagatcctattagggttaccgtcggt
gaggttggacgggccaacgaagacatcacccaacttgttcacgtaattccttctgatgct
gagaagatgccttggctgcttgagaagttgccgtcattgattgatgatggggatgttctt
gtctttgcgtcgaaaaaggcaacagtagatgaaattgaaagccagctggttcagaaaggg
ttcaaggtcgcggcactgcatggggacaaagaccaggcctctcgaatggacaccttgcag
aagttcaaatcggggatttaccatgttctagttgcaactgatgttgccgctcgtgggcta
gacataaagtcgataaagtcggttgttaactatgatattgcaaaagacatggacatgcac
gtccatcgtatagggagaactggccgtgctggtgataaagatgggacggcctacactctt
attacgctgaaggaggcacgctttgctggtgaactggtcaacagtttgattgctgctggt
caagatgtttctgtcgaattgatggatctggctatgaaggatgcaaggttcaggtccaaa
cgtgatcaaagaaaaggttcaggtgggaaaaaaggtggaggaagaggaaaaggaggcggt
ggcggtggcggtggcagtgggcgaggtgttcgtggtgttgatttcggccttggcatcggt
tataaacccgaggagtcaaatgcaacatctcagccagctccaggtagatctgctgctgtt
aattcgctaaggactgggatgatgcaacagttcaaaagcaactttgttgctgccgcttcg
agttctcagaacgataatataaccccaagcggtagtgctcccagcgcaagacctgttcta
cgaggttttgtttctggtggtatgattggtggagaggcggcatataaaacacaaccggtc
gctccttttaaccctccgtccaagcctgaaggaagcacaaacgaaaatgggaataagaag
aaccccgacagttcacgggataggccaagggagagaaagcggccttctggatgggatcgt
tga
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