Aspergillus clavatus: ACLA_007120
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Entry
ACLA_007120 CDS
T01148
Name
(RefSeq) nonsense-mediated mRNA decay factor (Upf2), putative
KO
K14327
regulator of nonsense transcripts 2
Organism
act
Aspergillus clavatus
Pathway
act03013
Nucleocytoplasmic transport
act03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
act00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
ACLA_007120
03015 mRNA surveillance pathway
ACLA_007120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
act03019
]
ACLA_007120
Messenger RNA biogenesis [BR:
act03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
ACLA_007120
mRNA cycle factors
P-body specific factors
ACLA_007120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
ApeC
Motif
Other DBs
NCBI-GeneID:
4705529
NCBI-ProteinID:
XP_001273379
UniProt:
A1CDM6
LinkDB
All DBs
AA seq
1195 aa
AA seq
DB search
MAFTGHQGPFAEPKSESQAILLPARKSTSRSSEPPPSPPSTDTQGELRDLNERAWAGESD
LFPVSKSLDSSLKKNTAFIKRLRTGINASVQQTFLADIRALSLHKYLSEIISACYEGLCK
LKTPGEIAAGVEITSALHQRFGPAEFTRQIGWLLGRGLSTPDKSQLKSLSQELREREEKE
RLSRHRVLLRVVTELWLVGVLRTLDDIERPEDLGSKGKDGVVGISGKAVDVVSKPKAVPS
TAKDGDKEAEPFPLEVLKDLLGHDREHVNLPLAVLFAKSFSWDILGAKTVDESRKTVDAD
GGTTSATPTGTANGGEDENATTAENDPPLVPEKMQLRFKSIMSRYLEDVKAHVVRDQRAL
AAQSRRNAEAYVKSGEIFEDRQANFEKQSKSLEKLVANTLVLCEVLGVDMPALAEQESAD
AASSGGIGLVKTAEYLRGQGEGSGFWEDEEERRFYENLVDLKGKVPAVLLEDGKKKKPEA
DETAKKKAEGEATPESTTEKAEVTNQTPSGEEKVTAETDDQSTAIASKTVGAQVDALLAK
LPDLQTKDQVDQLALDFCFLNSKASRNRLIKAVSDVPKGRIDLLPLYSRLVATLGQYLPD
IPQGLITYLDEEFRSLQRRKSKEFLGQVRMTNIRYLAELTKFGTVPEHIIFHCFKVSLDD
FSRMNIEIIGHLLENCGRYLLRNPETSPRMTSFLERLNRKKTIQHLGQQERMIIENAVYY
VDPPPRPAIQQKERTPMESYIRKIIYLDMNKRNYTKILKSIRKLHWEEQDVVDILERVFS
KPVKVKYGNIHLLAILVSALYRYHQNFVINIVDNILEQITLGLEQNDFKFNQKRVAEVKY
LGELYNYKMIDSPVIFDTLYRIVTFGYEGGTPIPGKINVLDLPDDFFRVRLVCTLLDTCG
HCFDRGSAKKKLDFFLTFFQYYFLTKDPLPMDLDFLVQDTFSMTRPQWNLATDLQEATQL
FSEAVAQNYKTQDSERPMEPDEDDAESSSSDDGLEDDVMPEIDEEQETSDEAEVSGPNAE
RDSDSDSEDEQIFVTRQEEERDPEVEAEFDREFEKMMAESMESRRFERKAVFDIPLPMRR
AGRDPSNSEGPIETPQERNTTMAFSLMTKKGNKQQTRTIDLPSDSSFALAMKSQQQADRE
EQQRIKNLVLNYEMTTEAENTGEVLEKRTPPKIDKSGSNRTAFRSRKLQLSDVNW
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaccggccaccagggtccattcgcagaacccaagtccgagtcccaggctatc
ctactccctgccagaaaatccacaagccgcagcagtgagcctcctcccagccctcccagc
actgacactcaaggggagcttcgcgatctgaatgagcgggcctgggctggagagagtgat
ctcttccctgttagcaaatcgctcgattcatcgttgaagaagaacacggctttcatcaag
cgtctccgaaccggcatcaatgcctctgtccagcagaccttcctggccgatattcgcgcc
ttgtcgctgcacaagtacctatccgagatcatttccgcctgttacgaaggcctatgcaag
ctaaaaacgccgggggagatcgctgcgggcgtggagatcaccagcgcgctacatcagcgc
ttcggacccgccgagttcacgagacagattgggtggctgttaggtcggggtctcagcacg
ccggacaagtcgcaactgaaatccctcagtcaggaactgcgcgagcgtgaagagaaggaa
aggctttcccgacatagggtgctactcagagtggttacggagctttggctggtgggcgtg
ctgaggaccctcgatgacattgagaggccggaagacttgggttccaaaggcaaggatggc
gttgttggaattagtggcaaagcggttgatgttgtttccaagcccaaggcggtaccatct
acggccaaggatggcgacaaagaggccgagccgttccctcttgaggtgttgaaggatcta
ctcggccacgaccgcgagcatgtgaacttaccacttgccgtcctatttgccaagagcttc
agctgggatattctcggagcgaagacggttgacgagagcaggaagaccgtggatgcagat
ggaggcactacatctgctacccccacgggaacagcaaacggtggggaggatgaaaatgcg
actactgccgagaatgatccgccactggtgccagagaaaatgcagctccgtttcaagagc
attatgagccggtacttggaggatgtgaaggcacatgttgttcgtgatcaaagagcgttg
gcagcccaaagtcgtcgaaatgcagaagcatacgtcaaaagtggcgagatttttgaggat
cgtcaagcgaactttgaaaagcaaagcaagtcgttggagaagcttgttgccaatacgctg
gtgttgtgcgaggttctcggggtggatatgccagccttggctgaacaagaatcggcagat
gctgcttcgagtggcggaattggtcttgtcaagactgccgagtacctgcgtggccaggga
gaaggttcaggtttctgggaagatgaggaagaacggcgattctatgagaatctggtcgac
cttaaaggtaaagttccggcagtcttgcttgaagatggcaagaagaaaaagcccgaggcc
gacgaaaccgcgaaaaagaaggcggaaggcgaagctactccggagtcaaccactgagaag
gctgaggtcacaaatcaaactccatcaggggaagaaaaagtcacggcagagacagatgat
caatctaccgctattgcgagcaagaccgttggagcacaggtggatgctctcctggcgaaa
cttcctgatctccagacgaaggatcaagttgatcagttggctctcgatttttgctttctg
aactctaaggcatctagaaacaggctcatcaaagctgtgtctgatgtccccaaaggccgg
attgatcttttgcctttgtattctcgacttgttgccactctagggcaatatcttccagac
atccctcaaggcttgatcacttatctggatgaggagtttcgaagcctccagcgccgaaaa
tccaaggaatttctcggccaggtccgcatgaccaacattcgctatcttgcagaattaacg
aagttcggtactgttccggaacacatcattttccactgcttcaaggtctctcttgacgac
ttttctcgcatgaacatcgagattattggtcacctgctggaaaactgcgggcgttacttg
ctccgcaacccagagacatcaccgagaatgacctcctttctcgagaggctcaacagaaag
aagactattcagcacctgggtcagcaagaacggatgatcattgagaacgcagtctactat
gtggatccgccaccgcgccctgccattcaacagaaggagcgcacgcctatggagtcctac
attcgaaaaatcatctatctggatatgaacaagcgcaattataccaagatcttgaagtca
attcgaaagcttcactgggaagaacaagatgttgtcgacattctggagcgagtcttcagc
aaacctgtcaaagtcaaatatggcaatatccatcttctcgcgatccttgtcagtgcgctt
tataggtaccatcagaacttcgtgatcaacattgtagacaacattctcgagcagatcaca
ttgggcctggagcagaatgattttaaattcaaccagaagcgcgtcgctgaggtcaaatat
ctcggggagctatacaactacaagatgattgactcaccggtgatctttgatactttgtat
agaattgtcactttcggctatgaaggtggtaccccaattcctggaaaaatcaacgttctg
gatctgccagacgactttttccgagtccgcctagtttgcacactcctcgacacttgtggt
cactgtttcgatcgtggatccgccaagaagaagctcgatttcttcttgactttcttccag
tactatttcctcacgaaagaccctcttcccatggatcttgacttccttgtgcaagacacg
ttttcgatgactcgtcctcaatggaacctcgcgactgatttgcaagaagctactcagctc
ttcagtgaagcagtggctcagaactataaaactcaagattcggaaaggcctatggaaccc
gacgaggacgatgcagaaagcagctcctctgatgacggtcttgaggatgatgtgatgccc
gagattgacgaagagcaagagacaagtgacgaggctgaagtttccggccctaatgccgag
cgagatagtgatagtgactccgaagatgagcaaatctttgtcactcgtcaagaagaggaa
cgggatcccgaggttgaggctgaatttgatcgcgaattcgagaaaatgatggcagaaagc
atggagtctcggcgcttcgagcggaaagccgtgtttgatattcctttgcctatgagacgc
gctggccgagacccttcgaacagtgaaggccctatcgaaacccctcaagagcgaaatact
acgatggctttttctctgatgacaaagaagggaaacaagcaacagacacgtacgattgat
ctaccctccgattctagttttgcactggccatgaagagccagcaacaggcggatcgggag
gagcagcaacgcatcaaaaacttagtcctcaactatgagatgacaaccgaagccgagaat
actggtgaagtgcttgagaaacgtacacctcccaagattgataaatcaggctccaaccgc
acagcttttcgttccagaaagctccagctcagcgacgtcaactggtag
DBGET
integrated database retrieval system
