Aspergillus clavatus: ACLA_046470
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Entry
ACLA_046470 CDS
T01148
Name
(RefSeq) ATP dependent RNA helicase (Dob1), putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
act
Aspergillus clavatus
Pathway
act03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
act00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLA_046470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
act03019
]
ACLA_046470
03041 Spliceosome [BR:
act03041
]
ACLA_046470
03009 Ribosome biogenesis [BR:
act03009
]
ACLA_046470
03016 Transfer RNA biogenesis [BR:
act03016
]
ACLA_046470
Enzymes [BR:
act01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACLA_046470
Messenger RNA biogenesis [BR:
act03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ACLA_046470
Spliceosome [BR:
act03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ACLA_046470
Complex C
U4/U6.U5 tri-SnRNP related factors
ACLA_046470
Ribosome biogenesis [BR:
act03009
]
Eukaryotic type
Pre-60S particles
Helicases
ACLA_046470
Transfer RNA biogenesis [BR:
act03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ACLA_046470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
ABC1K3_C
APG6_N
Motif
Other DBs
NCBI-GeneID:
4704314
NCBI-ProteinID:
XP_001271607
UniProt:
A1CH26
LinkDB
All DBs
AA seq
1082 aa
AA seq
DB search
MDELFDVFEDQPQAARPTDVAPTKRSKKDKSKKRQVNGAVKENGAGKETKEDIEIPDAPA
AEPVDGDDVNTPATENNAQQPEAKRPRLEQEPQPVLADEFETAQEREVAASAGLLASKET
TSVKLSHQVRHQVAIPPNYPYVPISQHKAPENPARVWPFTLDPFQQVAVASIEREESVLV
SAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTIN
PTATCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDAIRGVVWEETIILLPDKVRY
VFLSATIPNAMQFAEWIVKMHNQPCHVVYTDFRPTPLQHYFFPAGGEGIHLVVDEKGVFR
EENFQKAMSSIADKKGDDPADAMAKRKGRGKDKKLNKGGNEGPTDIYKIVKMIMLKNLNP
VIVFSFSKRECEACALNMSALAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLL
RRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFS
QRWVTPSEFVQMSGRAGRRGLDERGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYN
MILNLMRVEGISPEFMLERCFYQFQNTAGAAELEKELKALEEKKANMTISDEGTIREYYD
LRVQLDKYADDIQAVISHPDHCLTFMTPGRLVHVKHKDKDFGWGVVVNYKQRRPAKNSHE
EIPREQQYIVDVLMKIAEGPSVATKTFEELPSGVRPAKEGENSRMEVVPIVTGCIRAISH
VRLRVPKELNSKESRNGVKKLVDEVMRRFPDGIALLDPLEDMKIQGEEFKKTLRKVEVLE
SRLLANPLHNSPRLPELYQQYAEKEELGAKIKETKSKISDAMSIMQLDELKCRKRVLRRF
GFINEADVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQAAAALSVFVFEEKTKET
PALTREELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVQSFHWELMEVIYEWANGKSFA
DICGMTDVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIVAAQSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctcttcgatgtcttcgaagaccagcctcaagcggcgaggcccactgatgtc
gcacccaccaaacgatcgaagaaggataagagcaagaagcgtcaggtgaatggcgctgta
aaggaaaatggtgctgggaaagagaccaaggaggatatcgagattccagatgcacctgct
gccgaacccgtggacggcgatgatgttaacactcctgcgaccgagaacaacgcccagcaa
ccggaagcgaaacggccgcgtcttgaacaggaaccgcagcctgtgttagcagatgagttc
gagacggcacaggagcgcgaggtcgcagcgtctgcaggattactggcctccaaggaaaca
acgtcggtcaagctgtcccaccaggtccggcatcaggtcgccattccgcccaactaccca
tacgtaccgatctcacaacacaaggcccctgagaaccctgcgagggtgtggccgttcact
ctcgatcctttccaacaggttgcagttgcatcgatcgagcgagaggagagtgttctggtg
tccgctcataccagtgccggtaagacagtagttgcggagtatgccatcgcgcaaagcttg
aagaacaaccagagagtcatctacacaagtccaatcaaagctctgagcaatcagaaatac
cgagaatttgcggcggaatttggcgacgtcggtttgatgacgggagatgtgaccatcaac
ccaacagcgacctgtctggtcatgacaacagagattcttcggtctatgttgtatcgtggt
tccgagattatgcgagaagttgcgtgggttgtattcgatgagatccactacatgcgggat
gccattcgtggtgtcgtttgggaagaaactatcatcttgttgccggataaggtcagatat
gtgttcttgtccgcgacaattcccaatgcaatgcagttcgccgaatggatcgtcaagatg
cataaccagccctgccacgtcgtatataccgatttcagacctactcccttgcaacactat
ttctttcccgctggcggtgagggtattcatttggttgtcgacgagaagggcgttttccgc
gaggagaactttcaaaaagcgatgagcagcattgcggacaagaagggcgatgacccggca
gacgctatggccaagaggaaagggagaggcaaagataagaaactgaataaaggtggaaat
gaggggccgactgatatctacaagatcgtgaaaatgatcatgttgaagaacctgaacccc
gtcatcgtcttcagtttcagcaaacgtgaatgtgaggcgtgcgctcttaacatgagtgct
ctggctttcaacgatgactcggagaaggaaatggtttctaaggtcttcaacagcgctatt
gaaatgctttccgaggaggatcgcaacttgcctcagattcaaaacattttgccgctgctt
cggaggggcatcggtgtccatcattcgggtttgcttcccattctcaaggaaaccattgag
attctcttccaggaagggcttatcaaggtgctctttgctacggagacgttctctatcggt
ctgaatatgcctgcgaagaccgtggtgttcaccagcgttcgcaagttcgacggtttcagc
cagcgttgggtcaccccatctgagttcgtccagatgtccggtcgtgctggtcgaagaggc
ctcgatgaacgtggtattgtgattatgatggttggtgaagagatggatcccgccgtggcc
aaggaaatcgtgcgcggagagcaggatagactcaactcggcttttcatctgggttataac
atgattctcaacctgatgcgtgtggaaggtatctcgcccgagttcatgctcgagagatgc
ttctaccagttccaaaacacagctggtgccgctgagcttgaaaaagaattgaaggcattg
gaagagaagaaggccaacatgaccatctcggatgagggaaccattcgcgagtattacgat
ttgagagtgcagcttgacaagtatgcggacgacatccaggcggtcatcagccatccggat
cactgcctgactttcatgacccccggccggttagtccacgtcaaacataaagacaaggat
ttcggatggggtgtcgtggtcaattataagcaaaggaggccagcaaaaaattcgcacgag
gagatcccccgcgagcagcagtacatcgtcgatgtcttgatgaagattgccgaaggacct
tccgtagccacaaagaccttcgaggaattaccatcgggagtcagaccagcaaaggaaggc
gagaattcccggatggaggtcgttcctatcgtcaccggctgcatccgcgccatctcacac
gtgcgcctcagagtgcccaaggagttgaactcgaaagagtcgagaaatggagtcaagaag
ctggtggatgaagtaatgcgtcgctttcctgatggcatcgctctgcttgacccgctcgaa
gatatgaaaatccagggtgaagaattcaagaagacactacgaaaagtagaagtgcttgaa
tctcgtctgctcgccaatcctctgcacaactcaccgcgtctccccgagctctaccaacaa
tacgccgaaaaggaggagttgggtgcaaagatcaaggagacaaagagcaagatctcggac
gccatgtctatcatgcagcttgatgagcttaagtgccgaaaacgtgtgcttcgtcgattc
ggattcatcaacgaggccgatgtcgtccagttgaaggcccgagttgcgtgtgaaattagc
accggagacgaactcatgctcagcgagcttctgttcaacggtttcttcaataaactcacg
cccgagcaagccgcagcggcgctgagtgtgtttgtcttcgaagagaagaccaaggagact
ccagcgctcacccgagaagaactggcaaagcccctcaaggagatccaagcacaggcccgg
attgttgccaaggtctcgcaagaatccaagctggctgtcaacgaggaggaatacgtgcag
agcttccactgggaactcatggaagtgatctacgagtgggcgaacggcaagtcatttgct
gatatctgtggaatgacggatgtttacgaagggtccttgattcgcgtcttccgtcgattg
gaagagtgtctccggcaaatggcgcaagcctccaaggttatgggtaacgaggaactcgag
agcaaattcgaggaagctctgacgaaggtgcgcagagacattgtggctgcacagtctctg
tatctgtaa
DBGET
integrated database retrieval system
