Actinoalloteichus sp. AHMU CJ021: C1701_18660
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Entry
C1701_18660 CDS
T05306
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acta
Actinoalloteichus sp. AHMU CJ021
Pathway
acta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1701_18660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acta03019
]
C1701_18660
03400 DNA repair and recombination proteins [BR:
acta03400
]
C1701_18660
Enzymes [BR:
acta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1701_18660
Messenger RNA biogenesis [BR:
acta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1701_18660
DNA repair and recombination proteins [BR:
acta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1701_18660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
AAA_22
DUF7573
Motif
Other DBs
NCBI-ProteinID:
AUS81848
LinkDB
All DBs
Position
complement(4413880..4415997)
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AA seq
705 aa
AA seq
DB search
MDDEVLREIAEDRLRSLAGPGARLREDQWRAIRSLVVDRHRVLVVQRTGWGKSAVYFLAT
ALLRELGEGPTVIISPLLALMRNQLAAAEGAGVRAATINSANTTEWEDIQESVAVGEVDL
LLVSPERLNNPDFRDTVLPSLAENAGLLVVDEAHCVSDWGHDFRPDYRRLRSLLEGLDPD
VPVLATTATANDRVVRDVADQLGVGADTGRERTLVLRGPLDRESLRLSVLRLPDAETRLG
WLAENLGRLPGSGIIYTLTVSAAEDVATFLRERGFPASAYSGRTDPEDRQRAEADLLANR
VKALVATSALGMGFDKPDLGFVIHLGAPASPIAYYQQVGRAGRGVERAEVLLLPQREDAD
IWRYFASLAFPPEPVVRHLLSVLAEADGPVSTTALEPRVDLNRGRLEVVLKVLDVDGAVR
RVRGGWESTGREWTYDADRYGRIAEARRSEQSAMLDYLAHDGCRMEFLRRQLDDPDAAPC
GRCDNCTGRRWSAGVSEGERAAARSRLHTPGVSVQPRRQWPTGMGTLGVRVSGRIAEDER
TEPGRALGRLTDVGWGSRLRGLLREGEPAPTELPEDVVRGCVEVLASWGWATRPVGVVAV
GSSRADSLSRATAERIATIGRLPLLGEVTMTRPVARRANSAQRLASLWEAFALDDGLAQR
VAEAGGPLLLVDDRVDTGWTFAVVGRLLRRAGAPQVLPFALAATS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtggacgacgaggtgttgcgggagatcgccgaggaccggctgaggagcctggccggcccc
ggggcgcggctgcgggaggaccagtggcgggccatcaggtcgctggtggtcgaccggcac
cgggtcctggtcgtgcaacgcacgggttggggcaagtccgccgtgtacttcctggccacg
gcgctgttgcgggagctgggcgagggacccaccgtcatcatctccccgctcctcgcgttg
atgcgcaaccagctggcggcggcggagggcgccggtgtccgggccgcgacgatcaactcg
gccaacaccacggagtgggaggacatccaggagtcggtcgccgtcggggaggtcgacctc
ctcctggtcagcccggagcggctgaacaacccggacttccgggacaccgtcctgccctcg
ctcgcggagaacgcggggctgctcgtggtggacgaggcgcactgcgtctccgactggggc
cacgacttccgccccgactaccggcggctccgctccctcctggaggggctggacccggac
gtcccggtcctggcgacgacggcgacggccaacgaccgggtcgtgcgggacgtggccgac
cagttgggcgtcggcgcggacaccggccgggagcggaccctggtgctgcgcggaccgctg
gaccgggagagcctgcggctgtccgtgctccgcctgcccgacgccgagacgcggctgggg
tggctggccgagaacctgggccgcctccccggctcgggcatcatctacaccctgacggtg
tcggccgccgaggatgtcgccacgttcctgcgggagcggggtttccccgccagcgcctac
tcgggacgcaccgaccccgaggaccggcaacgcgccgaggccgacctgctggccaaccgg
gtgaaggcgctggtggcgacctccgcgctcggcatgggcttcgacaaacccgacctgggt
ttcgtcatccacctgggcgctcccgcctcccccatcgcctactaccagcaggtcgggcgc
gccgggcgaggtgtcgaacgcgccgaggtgctgctcctgccccagcgtgaggacgccgac
atctggcggtacttcgcctccctcgcgttccccccggaacccgtggtccggcacctgttg
tccgtcctcgccgaggcggacggcccggtgtccaccacggcgttggagccccgggtggac
ctcaaccgcggccgcctggaagtggtcctcaaggtcctcgatgtcgacggggcggtccgg
cgggtgcggggtggctgggagtccaccggccgggagtggacctacgacgccgaccgctac
ggccggatcgccgaggctcgccgctccgagcagagcgccatgctggactacctcgcccac
gacggctgccggatggagttcctgcgccgccagctcgacgacccggacgcggctccgtgc
ggccggtgcgacaactgcaccgggcgacggtggtcggccggcgtctcggagggcgagcgg
gccgccgcgcggtcgcggctccacacccccggcgtcagtgtccagccacgacgccagtgg
cccaccggaatgggcacgctcggcgtccgcgtcagcggccgcatcgccgaggacgaacgc
accgagcccggccgcgcactcggccggctcaccgacgtcggatggggcagccggctccgg
ggcctgctccgcgagggtgaaccggcgccgaccgagctgcccgaggacgtcgtgcggggg
tgcgtcgaggtgttggcgagctgggggtgggcgacccgcccggtcggcgtcgtcgccgtg
ggttcgtcccgcgccgactccctgagccgggcgacggccgaacgcatcgccaccatcggg
cggctcccactcctcggcgaggtgaccatgacccgaccggtggcgcgccgcgccaacagc
gcgcaacggctggccagcctgtgggaggccttcgcgctggacgacgggctcgcccagcgg
gtggccgaggcgggtggaccgctgctgctggtcgacgaccgggtggacaccggctggacg
ttcgcggtcgtcggcaggctgctgcgccgcgccggggctccccaggtgctgccgttcgcg
ctggccgccaccagctga
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