Actimicrobium sp. CCC2.4: RHM62_04895
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Entry
RHM62_04895 CDS
T09612
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
actb
Actimicrobium sp. CCC2.4
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
actb03016
]
RHM62_04895
Enzymes [BR:
actb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RHM62_04895
Transfer RNA biogenesis [BR:
actb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RHM62_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
WPX33184
LinkDB
All DBs
Position
1041969..1044041
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AA seq
690 aa
AA seq
DB search
MNLFFEESGDFKAGVMMSQAGEAYQVEMQSGKRTKVKVRDVLLQFAAPAPQELIAAAKSV
CDEIDLDFLWEVAGEEEFGFADLAVEYFGKAPQPEQSAGLLFLLHSSPIYFYKKGKGRYK
AAPETALKAAQAGIEKKKQQAIVQAQYVEQLKVHALPESMRPLVRQLLFKPDKNSLEFKA
LDAACSELQTTAPRLMLACGGLDSAKQLHFERFLYDQFPKGLAFPAFTIPAAPKLPVADV
QAFSIDDVTTTEIDDAFSVTTLADGMVRIGIHIAAPALGIQRDDAIDAMARARMSTVYMP
GDKITMLPDDLVQSFTLAEGKTCPAVSLYATLDPADWSVIKTETRAEAVPIAANLRHNTL
DEFVTEENLAAGTGEYPHKVEIALIWQWALVLEQGRMAKREGFGLRPEQNNRVDFNFYVD
DDVVTIAKRKRGAPLDKLVAELMIFANSTWGKLMNDCGVPGIYRAQGGGSGGWATKMAVR
MVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACVEHGVTAPLAAPFKPRDADLFA
IVSAFDATYSAYNEFQSNMERYWCLRWLGQQASHRLEAVVLKDEILRLADLPLVIKLPGM
QALPRGTQVLLDLARWDEVDLSVEARLIEVVPAAVEELGEDEEETQEADAVAEVDADTEV
NHIVAPDLDTIVDGAPLADGIGHGDGQPIP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattttttgaagaatccggcgatttcaaggccggcgtgatgatgtcgcaagcc
ggcgaggcctatcaggtcgagatgcagtccggcaagcgcaccaaggtcaaggtccgcgac
gtgctgctgcagttcgccgcaccggcgccacaagagctgattgccgccgccaaaagcgtg
tgtgacgagatcgatcttgatttcctgtgggaagtcgccggcgaagaagaattcggtttt
gccgacctggccgtcgaatacttcggcaaggcaccgcaaccggaacaatccgccggcctg
ctgttcctgttgcacagctccccgatctatttctacaagaagggcaagggtcgctacaag
gccgcgcccgaaaccgccctgaaagcagcacaggcaggcatcgaaaagaagaagcagcag
gccatcgtgcaggcgcagtacgtcgagcagctcaaggtgcacgcactgcccgaatcgatg
cggccgctggtgcggcaattgctgttcaagcccgacaagaacagcctcgaattcaaggcg
ctcgacgccgcctgcagcgagctgcaaaccaccgcgccgcgcctgatgctggcctgcggc
gggctggattcggccaagcagctgcacttcgagcgcttcctgtacgaccagtttccgaag
gggctggcttttccggcgttcacgattcccgccgcgccgaagttgccggtggccgacgtg
caggcgttctcgatcgatgacgtcacgaccactgaaatcgatgatgcgttctcggtcacg
acgctggccgatggcatggtgcgcatcggcatccacatcgctgcgccggcgctcggcatc
cagcgcgacgacgccatcgatgcgatggcgcgcgcgcggatgtcgacggtctacatgccc
ggcgacaagatcacgatgctgccggatgacctggtgcaatcgttcacgctggccgaaggc
aagacctgcccggcagtgtcgctgtacgcgacgctggatccggccgactggtccgtcatc
aagaccgagacccgcgccgaagcggtgccgattgccgccaacctgcgtcacaacacgctc
gatgaatttgtcaccgaagagaacctggctgccggtaccggcgagtatccgcacaaggtg
gagatcgcgctgatctggcaatgggcgctggtgctggagcagggccgcatggcaaagcgc
gagggtttcggtttgcggcccgagcagaacaaccgggtcgatttcaatttttatgtcgat
gatgatgtcgtcacgatcgccaagcgcaagcgcggcgcgccgctcgacaaactggtggcc
gaactgatgatttttgccaacagcacctggggcaagctgatgaacgattgcggtgtgccc
ggtatctatcgcgcgcagggcggcggcagcggcggctgggccaccaagatggcggtgcgc
atggtcacgcacgcggcaccgcatcagggcctgggcgttgatcagtacgcgtggagcact
tcgccgctgcgccgctataccgacctggtcaatcaatggcaaatcctggcctgcgtcgag
cacggcgtcaccgcgccgctggctgcgccattcaagccgcgcgacgccgacctgttcgcg
atcgtctcggccttcgatgcgacctacagcgcttacaacgaattccagtcgaacatggag
cgttactggtgtctgcgctggctgggccagcaagcgtcgcaccggctcgaggcggtggtg
ctgaaggatgaaattttgcgcctggccgatctgccgctggtcatcaagttgccgggtatg
caggcattgccgcgtggtacgcaggtcttgctggacctggcgcgctgggatgaggtggat
ctgagtgtcgaggcccgcctgattgaagtggtgcccgcagcggtcgaggaactgggcgag
gacgaggaagaaactcaggaagccgacgcggtggcggaagtcgatgccgataccgaggtc
aatcacatcgttgctcccgacctggacacgattgtcgacggtgcgccactggccgatggc
atcgggcacggtgacgggcagccgataccgtag
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