Actimicrobium sp. CCC2.4: RHM62_05450
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Entry
RHM62_05450 CDS
T09612
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
actb
Actimicrobium sp. CCC2.4
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actb03400
]
RHM62_05450
Enzymes [BR:
actb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHM62_05450
DNA repair and recombination proteins [BR:
actb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RHM62_05450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WPX33286
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Position
1171526..1174189
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AA seq
887 aa
AA seq
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MLLFPCLIAPSAQFWTDAADHLLVFLRDRPAPGGIADFSSSRVLVPTFEQARRLKLALAT
AVGSAFVPPVITTLSSWLALQVPADNVAGDSERLMALYAELRQHAWLKKLFSARRNTDLL
PLAQTLLALSDELTLSLLPAMRVFPQESEQRWQAALDQLSPAARELLSDESQLVWTIWRT
QLDQRDANASRLEHLLQLAARGAQSLVWISPVEADPFEQAFLSAYAERHDVLPICLDWRA
AALAPVCVTAWPELVDGSAAVDAPAALERIALFPACSLEDEAVRGAQTVLDWIAAGHARI
AIIAQDRVIARRLRALLERAEVFVADETGWKLSTTRAASALAALFDVVTSRAETGALLDL
LKSPFITVAPASVMTIELALRRANVTGGWEAAALALKALPAEHQLLLRLREQAGRFQRNC
SLGDWLATTREVLDALGMQTALSSDSAGEQLMALLDRIALECSGLGQPFSFAEWRAFVGL
QCESAAYEVSESDQRVVMLPLNGARLRSFDAVLVVGIDAGHLPSQPPETLFFANAVRREL
GLATREIRQRQQLRDLTELLSSGSTIVLSWQATVDGEPNTVSPWIERLQLTLLRAGLPVL
PEHRSDIAVQELQPALATMPAPAAPALLPAKLSASAYNSLIACPYQFFATRMLGLNAIDE
LSDLPEKRDYGDWLHQILAQYHATVSAGQVPLAQRAALLASVSEQIFRQELARNAAALGY
YVRWQKVMPAYLHWAAEREEQGWQFVIGEQQMERELCWPGGAIRLHGRVDRIDEHADGTR
AVLDYKTKAVQGLRDRFKQTEDHQLPFYGLLADARMSAGHYVALELTGSKTGDVAAPDYA
LWQDTLEHRIIEQMHAISTGAALPANGIDTVCQYCDVRGLCRKGAWA
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgttgttattcccttgcctgatcgcgccgtcggcgcagttctggaccgacgcggcagac
cacctgctcgtgtttttgcgtgaccggccggcccccggcggtatcgccgatttttcatca
tcccgggtgctggtgccgaccttcgagcaagcgcgccgcctcaagctggcactggccacg
gccgtcgggtcggccttcgtgccgcctgtcatcacgaccttgtcatcatggctggcattg
caggtgccggccgataacgtggcgggtgacagcgaacgcttgatggcgctgtatgccgaa
ctgcgccagcatgcgtggctcaaaaagctctttagcgcacgccgcaataccgacttgctg
ccgctggcgcagacgctgctggcgctgtcggatgaactgacgctgagcctgttgccggcg
atgcgcgtgtttccgcaggaatccgaacaacgctggcaggctgcgctcgatcaattgtca
ccggcggcacgcgagctgctgtccgacgagagccagctggtctggaccatctggcgcacc
cagctcgaccagcgcgacgccaatgccagccgcctcgagcacttgctgcagctggctgca
cgcggcgcgcagtcgctggtctggatctcgccggtcgaagccgatccgttcgagcaggca
ttcctgtcggcttatgcagaacgccatgacgtgctgccgatctgcctggattggcgcgcc
gcagcgctggcaccggtgtgcgtcacggcgtggccggagctggttgatggcagcgctgcg
gtggacgctcccgctgcactggaacgtatcgcgctgttccctgcatgcagtcttgaggac
gaagcagtgcgcggtgcgcaaaccgtgctcgactggatcgccgccggccatgcccgcatt
gccatcatcgcgcaggaccgcgtgattgcacggcgcttgcgggcgctgctggaacgcgcc
gaggtgttcgtcgccgacgagaccggctggaaattatcgactacccgtgctgcctcggcg
ctggcggccttattcgatgtcgtcacctcgcgcgccgaaaccggtgcgctgctggacttg
cttaaatctccgttcatcacggtcgcgcccgccagtgtgatgaccatcgaactggcgctg
cgacgggccaatgtcaccggtggctgggaggcggcagcactggcgctgaaggcgctgccg
gccgagcaccagttgctgctgcgcctgcgcgaacaggccggccgtttccagcgcaactgt
agcctcggcgactggctggcgaccacgcgcgaggtactcgatgcgctgggcatgcagaca
gccttgtcgagcgatagcgccggcgaacaattgatggcattgctggaccggatcgcgctg
gaatgcagcgggctgggccagccgttttcgtttgccgaatggcgcgccttcgtcggcctg
caatgcgagtcggctgcctacgaggtgtccgagtccgaccagcgggtcgtgatgttgccg
ttaaacggcgcgcgcttgcgctccttcgatgcagtgctggtggtcggtatcgatgccggc
catttgccgtcgcaaccaccggagacactgttcttcgccaatgcggtgcggcgcgaactg
ggcctggccacgcgtgaaatccgtcagcgccagcaattgcgcgacctgaccgaattgctc
tcgagcggcagcaccatcgtgctgtcgtggcaggccaccgtcgatggcgagcccaatacc
gtcagcccgtggatagagcgcttgcagctgaccttgctgcgcgccggcttgccggtgctg
ccagagcaccgcagcgacatcgcggttcaagagctgcagcccgcgctggcgacaatgccg
gctcctgcggcaccagcactgctgcccgccaaactatcagccagcgcttacaacagcctg
atcgcctgcccgtaccagttttttgcgacccggatgctggggcttaatgccatcgacgag
ctttccgacctgccggaaaaacgcgattacggcgactggctgcaccagatcctggcgcag
taccacgccactgtcagtgccggacaagtcccgctggcgcagcgcgcagccttgctggcc
agcgtgtcagagcagatattccggcaggaactggcacgcaacgcggcggccctcggctat
tacgtgcgctggcaaaaagtcatgccggcgtatttgcactgggccgccgaacgcgaagag
cagggctggcaattcgtcatcggcgagcagcaaatggagcgcgagctgtgctggccaggc
ggcgcgatccggctgcatggccgggttgaccggatcgatgaacatgccgatggcacgcgc
gccgtgctcgactacaagaccaaggccgtgcagggcttgcgcgaccgcttcaagcagacc
gaagaccatcagctgccgttttacggcctgctggcggacgcccgcatgagcgccggtcac
tacgtcgcactcgaactcaccggcagcaagaccggcgacgtcgccgcccccgattacgcc
ctttggcaagacaccctggagcatcgcatcatcgaacaaatgcacgccatttccaccggg
gccgccttgccggccaacggcatcgacaccgtttgccagtattgcgacgtgcgcggcctg
tgccgcaagggagcctgggcatga
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