Actimicrobium sp. CCC2.4: RHM62_07185
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Entry
RHM62_07185 CDS
T09612
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
actb
Actimicrobium sp. CCC2.4
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actb03019
]
RHM62_07185 (hrpA)
Enzymes [BR:
actb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RHM62_07185 (hrpA)
Messenger RNA biogenesis [BR:
actb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RHM62_07185 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
NACHT
SRP54
FtsK_SpoIIIE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WPX33603
LinkDB
All DBs
Position
1536037..1539981
Genome browser
AA seq
1314 aa
AA seq
DB search
MTSPQPIQKSPPGDRARRPSRPPAGSVRPAPVRNRLPPITYPEELPVSGRREDIAAALRQ
HQVIIVCGETGSGKTTQLPKICLELGRGLTGMIGHTQPRRIAASATAKRIAQELNSPLGE
LVGFKVRFTDTLSAGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGY
LKQLLPKRPDLKIIITSATIDADRFARHFGSDDKPAPVIEVSGRLYPVEIRYRPVDSTDR
SEVKPGGVQSNAQKERGQRDLMEALTEAVDELCRIGSGDVLVFLPGEREIRDAAEALRKH
HPPHVEILPLFARLSAQEQERVFKPSGARRIVLATNVAETSLTVPGIRYVVDAGLARVKR
YSYRNKVEQLQIEAVAQSAANQRAGRCGRVAAGVCIRLYEEKDYLARPAFTEPEILRSSL
ASVILRMKSLHLTDVETFPFIEPPPGRAIADGYQLLQELGAVDDNNDLTPTGRQLGKLPL
DPRVGRMILAALDNVCLREVLIIASALSVQDPRDRPLEVQAAADLAHKKFADEKSEFSSY
LKIWSWFEEAIEHKKTNRQLQDSCRANFLSQMRLREWRDVHSQLLTIVKEQGWRLNETLT
TYENLHSALLTGLLGNVGFKSDEDTHYLGARAIKFHIWPGSSLLKKAGKWIMAAELVDTT
RLYARCVAQIQPEWLERVGAHLLKKSYGEPHWEKRTAQVTASERATLYGLVVYSQRRINF
GLINPVEAREIFIRDALVGGEFDTRAPFFAFNNNLIREIENLEHKSRRLDVLVDDELIAA
FYDKMLPADICNGISFEKWHKDATRAEPKLLYLNRDDLMRHEAAGITTDLFPKLLPGIGI
EMPLAYHFEPGTPRDGVTLTVPLFALNQLSAARCDWLVPGMLKEKVHLLLKSMPQKLRRN
CVPLPHYAAAFLDRVSEQKTFGRGSLIEAIIADVRVHAHITPLLSDFKAETLPAHHFMNF
KVVDEHGRQLEMGRNLSALQAEFGGQARESFQKIAESTAITNVPVAQAKVLGKSMQPAVS
VVASTAAPTQHQKLTAWTFGELPELLEIQQGKLTLIGFPALVDKGAHCDLEVFDDPTEAA
RIHRGGLRRLLALQLREQLKYLEKNIPGLQQMGMQFMALGSQEELRDQIIEAGLERACLQ
EPLPRTAIEFDARKEAGKSRLGLLVNEIARLVGLILTEYHALPKKLQGAKGHAATVADIQ
AQLQGLVGKRFVTETSYTSLTQFPRYLKAVNVRLEKLRIDPSRDVRWMTEWQQAALLWQR
GLKEKQTGRTADPKMAEFRWLLEELRVSLFAQELKTPMPVSAKRLQKVWESMQR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgacatccccccaaccgatacaaaaaagtccgcccggcgatcgcgcccgccgaccttcc
cgcccgcctgccggttccgtccgccctgcgcccgtgcgcaatcggctgccgccgattacc
tatcccgaagaattgccggtctcgggccggcgcgaagatatcgctgccgcgctgcgccag
catcaggtcatcatcgtctgcggtgaaaccggttccggcaaaaccacccagctgccgaag
atctgcctcgaactcggacgcggcctgaccggcatgatcggccacacgcaaccgcgccgg
attgccgcctcggcgacagccaagcggattgcgcaggaactcaattcgccgctgggcgag
ctggtcggtttcaaggtgcgcttcaccgacacgctgtcggccggcgcgtggatcaagctg
atgaccgacggcatcctgctggcagaaacccagaccgatccgctgctgcgccagtacgac
accatcatcatcgacgaggcccacgagcgcagcctgaacattgatttcctgctcggctac
ctcaagcaattgctgccgaagcggcctgacctgaagatcatcatcacctcggccacgatc
gatgccgaccgcttcgcgcgccacttcggcagcgacgacaaaccggcaccggtgatcgaa
gtctcggggcgtttgtatccggttgaaatccgctaccgtccggtcgattcgaccgaccgc
agcgaggtcaaacccggcggcgtccagagcaatgcgcaaaaggaacgcggccagcgcgac
ctgatggaagcgctgaccgaagccgtcgatgaactgtgccggatcggctccggcgacgtg
ctggtgttcctgcccggcgagcgcgaaatccgtgacgccgccgaagccttgcgcaagcac
catccgccgcatgtcgagatcctgccgctgtttgcgcgactgtccgcgcaagagcaggag
cgggtttttaaaccgtccggcgcgcgtcgcattgtgctggcgactaacgtcgccgagact
tcgctgacggtgccgggtattcgttacgtggtcgatgccggtctggcgcgcgtgaaacgg
tacagctacaggaataaggtcgaacaactgcagatcgaagcggttgcgcagtctgccgcc
aaccagcgcgccggtcgttgcggccgcgtcgccgccggcgtctgcatccgcctgtacgaa
gaaaaagattatctggcgcgccccgccttcaccgagccggagatcctgcgctcgtcgctg
gcctcggtcatcttgcgcatgaagtcgctgcacctgaccgatgtcgagaccttcccgttc
atcgaaccgccaccggggcgggcgatcgccgatggctaccagttgctgcaggagttgggc
gcggtcgatgacaataatgacttgacgccaaccggtcgccagctcggcaaattgccgctg
gacccgcgcgtcggccgcatgatcctggccgcgctcgataacgtctgtttgcgcgaagtg
ctgatcattgcgtcggcgctgtcggtgcaagacccgcgcgaccggccactggaagtgcag
gccgccgccgacctcgcgcacaagaaattcgctgatgagaaatccgaattttcgagctac
ctgaaaatctggagctggttcgaagaggccatcgagcacaagaaaaccaatcgccagttg
caggacagttgccgcgccaatttcctgtcgcagatgcgtttgcgcgaatggcgcgacgtg
cattcgcaattgctgaccatcgtcaaggagcagggctggcgcctaaacgagacactgacc
acctacgagaacctgcactcggcgctgctgaccggcttgctcggcaatgtcggtttcaag
tccgacgaagacacgcattacctcggcgcacgtgcgatcaagttccatatctggcccggt
tccagcctgctcaaaaaagccggcaagtggattatggctgccgagctggtcgataccacg
cgcttgtatgcgcgctgcgtcgcgcagatccagccggaatggctggagcgcgttggcgcg
catctgctgaaaaaatcgtatggcgaaccgcactgggaaaagcgcaccgcgcaggtcacc
gcgtccgagcgcgcgacgctgtacggactggtggtgtacagccagcgccgcatcaatttc
ggcctgatcaatccggtcgaggcgcgcgagatttttatccgcgatgcgctggtcggcggc
gagttcgatacccgcgccccgttcttcgccttcaacaacaacctgatccgcgagatcgaa
aacctcgaacacaaatcgcgccggctcgatgtgctggtcgacgatgaattgatcgcggcg
ttctacgacaagatgctgccggccgacatctgcaatggcatcagcttcgagaagtggcac
aaggacgcgacccgcgccgaaccgaaactgctgtacctgaaccgcgatgacctgatgcgg
cacgaagcggccggcatcaccaccgacctgtttccgaaactgctgccgggcatcggcatc
gagatgccgctggcgtatcacttcgaacccggcacgccgcgcgatggcgtcacgctgacg
gtgccgctgttcgcgctgaaccagctgtcggcagcgcgctgcgactggctggtgccgggc
atgctaaaagaaaaagtccatctgctgctgaagtcgatgccgcaaaaactgcgccgcaat
tgcgtgccgctgccgcattacgccgcggcttttctggaccgggtcagcgagcaaaaaacc
tttggtcgcggcagcctgattgaagcgattattgccgacgtgcgcgtgcatgcgcacatc
acgccgctgctcagcgacttcaaggccgagaccttgccggcgcatcacttcatgaatttc
aaggtggtcgacgagcatggccggcagcttgaaatgggccgcaacctgagtgcgctgcaa
gccgaattcggtggccaggcgcgcgagagtttccagaaaatcgccgagtcgaccgcgatc
acgaacgtaccggtggcgcaggccaaagtgcttggaaaatcgatgcagccagccgtgtca
gtcgttgcctcgacagccgcgccaacccagcaccagaagctgaccgcgtggaccttcggt
gaattgcccgagctacttgaaatccagcagggcaagctgacgctgatcggctttccggct
ttggtcgacaagggcgcgcattgcgacctcgaagttttcgatgatccgaccgaagccgcg
cgcatccatcgtggcggcttgcggcgtttgctggcgctgcagttgcgcgagcagctcaag
tacctcgaaaagaatatccccggcctgcagcagatgggcatgcaatttatggcgctcggc
tcgcaggaagaactgcgcgaccagatcatcgaggccggcctggagcgggcctgcctgcag
gagccgttgccgcgcacggccatcgaattcgatgcccgcaaggaagccggcaagtcgcgt
ctcggtttactggtcaatgaaatcgcgcggctggtcgggttgatcctgaccgagtaccac
gcgctgccgaagaagctgcaaggcgccaagggacacgctgccactgtggctgatatccag
gcgcaattgcagggactggtcggcaagcgcttcgtgaccgagaccagctacaccagcctg
acccagttcccgcgttacctgaaagcggtcaatgtccggctggaaaagttgcgcatcgat
ccgtcgcgtgatgtccgctggatgaccgagtggcagcaggccgccttgctgtggcagcgc
ggcctgaaagaaaaacagaccggccgcacggcggacccgaagatggcggaattccgctgg
ttgctggaagagttgcgcgtatcgctgtttgcgcaggaattgaaaacgccgatgccggtg
tcggccaagcggctgcagaaggtgtgggagtcgatgcagcggtag
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