Actimicrobium sp. CCC2.4: RHM62_15335
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Entry
RHM62_15335 CDS
T09612
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
actb
Actimicrobium sp. CCC2.4
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
actb03009
]
RHM62_15335 (rlmD)
Enzymes [BR:
actb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RHM62_15335 (rlmD)
Ribosome biogenesis [BR:
actb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RHM62_15335 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
UPF0020
Methyltrans_SAM
Methyltransf_23
Methyltransf_32
Methyltr_RsmB-F
MTS
PCMT
Motif
Other DBs
NCBI-ProteinID:
WPX31600
LinkDB
All DBs
Position
complement(3332045..3333385)
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AA seq
446 aa
AA seq
DB search
MPHTILEIRSLDMEARGVGNLVNEDGSHGKVIFVEGALPGEQVRFLSFRKKSKWEAARMT
ALVRESAMRVTPQCAYFGTCGGCAMQHLDAAAQVAIKQRVLEDNLWHIGKVRPRLMLRPI
YGPTWGYRYRARLSVRNVPRKGGVLVGFIEKKSSYLTDMTSCDILPPKVSALLVPLRELI
AALSIVEQVPQIELAVGEGNDGVVTVLVLRIMAPLSRADEVLLKAFADLHRIVWWLQAAG
PESAVPYYPANQSLQYSLPEFGITMPFKPTDFTQVNHQINRVLVARALRLLDAQPEERIA
DLFCGLGNFTLPIATQVRAVVGIEGSAALTQRAMDNARFNGVQDKTSFECRNLFDITGAD
LVALGYFDRLLIDPPRDGAMALCEALAELQPVQKPRRIVYVSCNPATLARDAQLLVAGGY
VLSQAGVVNMFPHTAHVESMAVFDLA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacactattctggaaatccgatccctcgacatggaagcgcgcggtgtcggtaac
ctcgtcaacgaagacggcagtcacggcaaggtcatttttgtcgaaggcgcgctgccgggc
gaacaggtgcgcttcctgtcatttcgcaagaaatcgaaatgggaagccgcccgtatgacg
gcactggtgcgtgaatcggcgatgcgggtcacgccgcaatgtgcgtacttcggcacttgc
ggcggttgcgcgatgcagcacctcgatgctgccgcacaggttgccatcaagcagcgcgtg
cttgaagacaatctctggcatatcggcaaggtgcggccgcgcctgatgctgcgaccgatc
tacggcccgacctggggttaccgctatcgcgcccgtctgtcggtgcgcaacgtaccgcgc
aagggcggcgtgctggtcggcttcattgaaaaaaaatcctcctacctgaccgacatgacc
agctgcgacatcctgccgcccaaggtctcggcattgctggtgccgctgcgcgaactgatc
gctgccttgtcgattgtcgaacaggtaccgcagatcgaactggctgtcggcgagggcaat
gacggcgtggtcacggtactggtgttgcgcatcatggcgccgctcagtcgtgccgatgaa
gtattgctcaaggcctttgccgatctgcaccggatcgtctggtggctgcaggcggccggt
ccggagagtgccgtgccgtactacccggccaaccagtcgctgcagtactcattgccggaa
ttcggtatcacgatgccgttcaagccaaccgatttcacgcaggtcaatcatcagatcaac
cgggtgctggtcgcccgtgcgttgcgcttgctggatgcgcaaccggaggagcgcatcgcc
gacctgttttgcggtctgggcaatttcacgttgccgatcgccacgcaggtgcgcgcggtg
gtgggcatcgaaggcagtgccgcgctgacgcagcgggcgatggacaacgcacgctttaat
ggtgtgcaggacaagaccagtttcgagtgccgcaacctgttcgacatcacgggcgcggat
ctggtcgcgctgggttacttcgatcgcctgctgatcgatccgccgcgcgatggcgcgatg
gcgctctgcgaagcgctggccgaactgcagccggtgcagaagccgcgacgcattgtgtat
gtctcgtgcaatccggcgacgctggcaagggatgcccagttgctggtggcgggagggtat
gtgctgtcgcaagccggcgtggtcaacatgttcccgcacaccgcgcatgtcgaatcgatg
gcggtcttcgatctggcatga
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