Actimicrobium sp. CCC2.4: RHM62_18445
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Entry
RHM62_18445 CDS
T09612
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
actb
Actimicrobium sp. CCC2.4
Pathway
actb03030
DNA replication
actb03430
Mismatch repair
actb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHM62_18445 (dnaE)
03430 Mismatch repair
RHM62_18445 (dnaE)
03440 Homologous recombination
RHM62_18445 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actb03032
]
RHM62_18445 (dnaE)
03400 DNA repair and recombination proteins [BR:
actb03400
]
RHM62_18445 (dnaE)
Enzymes [BR:
actb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RHM62_18445 (dnaE)
DNA replication proteins [BR:
actb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RHM62_18445 (dnaE)
DNA repair and recombination proteins [BR:
actb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RHM62_18445 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
WPX32177
LinkDB
All DBs
Position
complement(4011556..4015008)
Genome browser
AA seq
1150 aa
AA seq
DB search
MTSPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARKK
GIKPIIGCDVWITNDDDRDKPSRLLLLAKNAAGYLQLCELISQAWLSNLHRGRAEIRTDW
LEKLSPANGLIALAGAHFGDVGIAIENGNLAAAERNAQRWSRIFPGHFYIEIQRAGQPNQ
EAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLANARRVKRFNDRQ
CFTTQAEMAALFADLPAALQNANEIAKRCNLTLQLGKPRLPDFPTPEGMTIGDFLVAEAR
SGLERRLLQLYPDATKREAERQRYAERLDFETNTIIKMGFPGYFLIVADFIQWAKNNGVP
VGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY
VKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKLIPFKPGKQVTIADAI
LEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPGKLTDFCPLYTQGGDA
GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMADFSLEKLPLNDKASY
DLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCRRKHGER
FDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHRQ
IFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAYHTAYLKAHHPAAFMAA
NLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGEPGKRAKQIRYGLGAVK
GSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIRAGAFDCFEVDRAVLLA
SVALALEAAEQHEASINQVSLFGGDDSDLDTQPEYVKVAPWTDKQRLTEEKTALGFYLSG
HLFNSYAEEVRRFARTKLSSLEPSRDPRMIAGIIVSLRVQMTQRGKMVIVTLDDSSATVD
VTVYNEIYDANKRMFKEDEFLCVSGKVSEDRFSGGLRITAEKVMDIAAARIQYGKQITLA
HSGKLDAAQIKTLLTPYRSEAGLPFLLRYTRAGAECELRLADEWKVLPADGLKQALAEKM
GRECVEFEYF
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgacttctccgcaatttacccacctccgcctccattccgaatactcgatcgtcgatggc
ctgatccgcatcgatgacgtggtcgatgccgccgccgccgacagccagccatcgctggcc
atcaccgacctggccaacctgttcggcatggtcaagttctacaaggccgcccgcaaaaag
ggcatcaagcccatcatcggttgcgacgtctggatcaccaacgacgacgaccgcgacaag
ccgtcacgcctgttgctgctggcaaaaaacgccgccggctacctgcaattgtgcgagctg
atttcgcaagcctggctgtcgaatctgcatcgcggccgcgccgaaatccgcaccgactgg
ctggaaaaactcagcccggccaatggcctcattgcgctggcgggcgcacattttggtgat
gtcggcatcgccatcgaaaacggcaatctggccgctgccgaacgcaatgcgcaacgctgg
tcgcgcatctttcccggccatttttatatcgagatccagcgcgccggccagcccaaccag
gaagcccaggtgcgccagctggtggcgcttgccgcacgcctgcagttgcccgtggtggca
acgcatccgatccagttcctgaccaaggaagagttcattgcgcatgaagcgcgcacctgt
atttcggaaggcgagatgctggccaatgcgcgccgcgtcaagcgcttcaatgatcgccaa
tgcttcaccacgcaagctgaaatggccgcgctattcgccgatctcccggccgcgctgcaa
aatgcaaatgaaatcgccaagcgctgcaatctgacactgcaactcggcaagccgcgcctg
ccggattttccgacacccgaaggcatgacgatcggcgacttcctggtggccgaagcgcgc
agcgggctggagcgccgcctgttgcagctctatcccgatgcgaccaaacgcgaagccgag
cgccagcgctatgccgaacggctcgatttcgagaccaacaccatcatcaagatgggcttt
ccgggctacttcctgatcgtcgccgacttcattcagtgggccaagaacaatggcgtgccg
gtcggaccgggccggggttcaggcgccggttcgctggtggcgtattcactcagtattacc
gaccttgatccgctcgaatacaacctgctgttcgagcgcttcctcaatccggaacgggtc
tcgatgcccgactttgatatcgacttttgccaggaaggccgcgaccgcgtgatccagtac
gtcaaggatcgctacggcaaggaggccgtctcgcagatcgccactttcggtacgatggcc
gccaagggcgcgatccgcgatgtcggtcgcgtgctcgacatgggctacaacttctgcgac
gggatttcgaagctgatcccgttcaaaccgggcaagcaggtcacgatcgccgacgcgatt
cttgaagaacccttgctggccgagcgtcaggaaaacgaagacgaagtacgccagttgctc
gacctcgcgcaacaggtcgaaggcatcgcccgcaacatcggcatgcatgccggcggcgtc
gtcatcgcgccgggcaagctgaccgacttttgcccgctgtacacgcagggcggcgacgcc
ggcgtggtctcgcaatacgacaaggacgacgtcgaagccgtcggcctggtgaagttcgac
ttcttgggattgaccacgctgaccatccttgattgggcggtgcgctacatcaagcggctc
gatccggcgatggccgatttcagtctggagaaattgccgctcaacgacaaggcgtcctac
gacttgctgaccaaggccaagacggtcgcggtgttccagctggaaagccgcggcatgcaa
ggcatgctgaaggacgcgcggcccgaccgtttcgaggacatcatcgcgctggtggcgctg
taccggccgggtccgatggatctgattccggacttctgccgacgcaagcacggcgagcgt
ttcgattatcccgacccgcgcaccgaaggcatcctgtccgaaacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcaggtggtcggcggttactcgctgggcggtgcc
gacttgctgcggcgcgcgatgggtaaaaagaaggccgaggaaatggctgagcaccggcag
attttccgcgacggtgcggccaaggatggcttgtccgaagccaaggccgacgagattttc
gacttgatggaaaagttcgccggctacggattcaacaaatcccacgctgccgcctacgcg
ctgctggcctatcacaccgcctacctgaaagcccatcacccggctgcgttcatggctgcc
aacttgtcgctggcgatggacgataccgaaaaaatccgcatcctggtcgaggacgtcatc
gatgtctgcgcgatgaccttgctgccgcccgacatcaatcaatccgactaccgtttcacg
ccggttggcgagccgggcaagcgcgccaagcagatccgttacggactcggcgcggtcaag
ggctcggggcagggcgcgatcgaagcgatcgtcgcggcgcgggccagtggcccgttcact
gacctgttcgattttgccaagcgggtcgacaagcgccaggtcaaccggcgcaccgtcgat
tcgctgatccgggccggcgccttcgattgcttcgaggtcgatcgcgcggtcctgctggcc
tcggtcgcgctggcgctggaagcggccgagcagcatgaagcgtcgatcaaccaggttagc
ctgtttggtggtgacgacagcgatctggatacgcaaccggaatacgtcaaggtcgcgccc
tggaccgacaagcagcgcctgaccgaagaaaagaccgcacttggtttttatctgtctggc
cacctgttcaactcgtacgccgaagaagtccgtcgcttcgcccgtaccaagctatccagc
ctggaaccatcgcgcgacccgcgcatgattgccggcatcatcgtctcgctgcgggtacaa
atgacccagcgcggcaagatggtcatcgtcacgctcgatgattccagcgccaccgtcgac
gtcacggtctacaacgagatctacgacgccaacaagcgcatgttcaaggaagacgaattc
ctgtgcgtctcgggcaaggtctcggaagaccgcttctcgggcggcttgcgtatcaccgcc
gagaaggtcatggacatcgcggcggcgcgtatccagtacggcaagcagattacgctcgcg
cattcgggcaagcttgatgcggcgcagatcaagactttgctcacgccgtatcgctcggaa
gccgggttgccgtttttgctgcgctatacccgggccggcgccgagtgcgaattgcgcctc
gccgacgaatggaaagtcttgccggctgatgggctcaagcaggcgctggccgagaagatg
gggcgcgaatgcgtcgagttcgaatatttttga
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