Actimicrobium sp. CCC2.4: RHM62_18640
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Entry
RHM62_18640 CDS
T09612
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
actb
Actimicrobium sp. CCC2.4
Pathway
actb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHM62_18640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actb03019
]
RHM62_18640
Enzymes [BR:
actb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHM62_18640
Messenger RNA biogenesis [BR:
actb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHM62_18640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WPX32215
LinkDB
All DBs
Position
complement(4060131..4061645)
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AA seq
504 aa
AA seq
DB search
MTDIQTDAVPDREPALRFEDFGLSAEILRALADQGYEHPTPIQAAAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTP
LRSTVVFGGMDMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLD
MGFLPDLQRIINLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQV
VYKVDSDDAKRDIVAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQS
ERMAALEAFKGGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGAS
GDAISLFTTKDERLLLDIEKLINHKFVPAELVGYTPPVERAERRPRRDAEAAAAPLAAGA
VSAQAPTERPVRPPRPFREDSSHSESSRTDTSRPPFQRREKVDPWFSKPYEPNVAAPVEP
VSATAAANKNKPRRAVLLGGVPKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatccagaccgacgctgttcctgacagggaacccgccctccgctttgaagat
ttcggactatccgctgaaatcctgcgcgccctcgctgatcagggctacgagcatcccacc
cctatccaggcggcggcaattcccgtggtcctgcaaggccgcgacgtcatgggtgcagcg
caaaccggaaccggcaagactgccggtttttcattgccgatcatccagttgttgctggcc
aatgccagtaacagtgcctcgccggcgcgccatccggtgcgcgccttgatcctgactcca
acccgcgaactggccgaccaggtcgctgaaaacgtcaaggcttattgccgtcatacgcca
ttgcgctcgaccgtcgttttcggtggcatggacatggcaccacagaccgccgccttgcgc
gcgggtgtcgagatcgtcatcgccacgccgggtcgcttgctcgatcacgtccagcaaaaa
acgctgaacctgtcgcaaacccagatcctggtcatggacgaagccgaccgcatgcttgac
atgggcttcctgccggacctgcaacgcatcatcaacttgctgccgaagaagcgccagaac
ctgatgttctcggccacgttctccggcgagatcaaaaagctcgccagcagttttctggat
aatcccgtcactatcgaagtcgcccgcagcaaccagaccgccgaccgtgtcacgcaagtg
gtctacaaggtcgacagcgacgatgccaagcgcgacatcgtcgcgcacctgatccgcggt
cgccagctcaagcaggtgctggtgttttcgaacaccaagataggcgcatcacgcctcgcg
cgcgaactggaaaaaggcggcgtcaaagcgtcggcaattcatggcgacaagacccagtcc
gaacgcatggccgcgctcgaagcgttcaaggggggcgagattgacgtgctggtggcgact
gatgtggcggcgcgcggcctcgacatctctgacctgccgtgcgtgatcaattacgacttg
ccgtacaacgccgaagactacgttcaccgcatcggccgcactggtcgtgcgggtgcgtcg
ggggatgcgatttcgctgttcacgaccaaggatgagcggctgctgcttgatatcgaaaag
ttgatcaaccacaagttcgtgccggcagagctggtcggctacacgccgccggtggagcgc
gccgagcgacggccgcggcgtgatgcggaagctgccgctgcgccgctcgcggcaggtgct
gtttcagcgcaggcgccgacggagcgtccggtgcgtccgccgcgtcctttccgcgaagat
tccagtcattcggagtcgtcccgaaccgatacctcccgtccgccatttcagcggcgcgaa
aaagtcgacccatggttttccaaaccgtacgagccgaacgttgccgcaccggtcgaaccg
gttagtgccaccgcagcagcaaacaagaacaagccgcgcagggcggtgttgttgggtggg
gtgccgaaggggtaa
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