Actinomyces sp. Chiba101: CHIBA101_0291
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Entry
CHIBA101_0291 CDS
T05279
Name
(GenBank) HrpA family ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
actc
Actinomyces sp. Chiba101
Brite
KEGG Orthology (KO) [BR:
actc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actc03019
]
CHIBA101_0291
Enzymes [BR:
actc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHIBA101_0291
Messenger RNA biogenesis [BR:
actc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CHIBA101_0291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
T2SSE
PhoH
TsaE
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAW92163
LinkDB
All DBs
Position
complement(341413..346164)
Genome browser
AA seq
1583 aa
AA seq
DB search
MDTTSAAGDAGESRGHQQERRDRRDSGGRREGSGRGCRPARKQDGHGRRRHGNRQGRRPR
RSWPGFTPEQLAERAASVPAIVYPDELPVTARRTEIAEAIQHNQVVIVAGETGSGKTTQI
PKICLELGRGITGMIGHTQPRRIAARSVAERIADELGTRISSEGIVGYQVRFTEEVGART
LIKLMTDGILLAEIQSDPMLTRYDTIIVDEAHERSLNIDFILGYLARLLPSRPGLKVIIT
SATIDSERFAEHFGTERSRPDGGGAPDGDARSDGAAPTPAARVPAPVIEVTGRTYPVEIR
YRPLSADEPDDGADAADGTGRAPRAGRAKRPEPAPREDRDQVTGILDAVDELLATGPGDI
LVFLAGERDIRDTESALADHLGPRLAVDGRSRLPGGVEVVPLYSRLSAAEQHRVFEPHST
RRIVLATNVAETSLTVPGIRYVVDPGLARISRYSNRTKVQRLPIEPISRASANQRSGRCG
RLADGVAIRLYSEADFGSRPEYTEPEILRTSLASVILQMAALGLGAVEDFPFIDPPDRRA
VRDGIALLAEIGAIEPDGAARADGPRLTAVGRRLARLPIDPRLGRMLLEAGELGCAGEVL
VIVAALSIQDVRERPVDKQEASDALHRRFADPTSDFLTYLNLWRYLRTQSRELSGSAFRR
MCRAEFLHYLRIREWQDVHTQLRQMSRQLGLSPSPVELPTARAIRAAGAALEPGSHAAQI
AHGDVAAAVVALGRSADTPDADAIHRSLLVGLLSNVGNWDERRREYAGARGTRFTIWPGS
GLRRKTYDWVMTAELVETSRLFARTVAKVDERWIEEAAERAGLLRRVYGEPYWSTRHGAA
MVHEKVMLYGMTLVADRPSTLASVGTDSARQVAREMFIRSGLVEGGWHARHGFVERNREL
REELEDVERRRREHGLLASDEALFDFYDDRLPEDVHGAADFDAWWKRERGRHPDLLDFTR
ELLLPGDDDATGYPDAWTQGDLTLGLEYVFEPGHPHDGVTVRVPIEVLGRLEPKGFDWLV
PGMRPELVVATIRALPKRVRRQLVPAPDVGAQVWALLQEEYPTPPGASCPDTPFEEAFAA
AVGRLRGVEIRDDDWAEAAERLPDHLSIAFVALDARGGVLGRGKDLVALQRRLSGRTQEA
VRSAVHGALAQAMEEARARSDGRDGSRGPGKKKGGRGTRHGNQTGKRARNEPSTGDGASP
AGMAARGAGCAGPAGVSAGLAERAGLEEWPNGLAGLTGRDSSTIPATVESTGVAGLVVRG
YPALVASGGATRLRPGGADSGDSGGRAPQGPSATGSSGRVSGKGRGEKAGGTGGGGRPAA
PAADLVILSDAVAQEREHPAGVITLALARAALPTGRITSRWSGGESLMLAASPYRSTEAL
VADLQLAAARAVAEQWAARTGRRLAEVREKAAFDELAGAMREGLEDEVHRIALIVVRALE
ARREVQDAVDAHTSLALLTTLQEVREQAAALIADGFIAAAPASRLQHLPRYLKALAMRVE
RAASSPSAASQDAALAYQAREALALVERARERSADLPPDAAREAALTEARWMVEELRVSL
FAQTLGTSQKVSPQRISKLVATI
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atggataccaccagtgctgccggcgacgccggtgagagccgcgggcaccagcaggagcgc
cgcgatcgccgcgactcgggcggtcggcgggagggcagtggccgggggtgccgccccgcc
cggaagcaggacgggcatggccgccggcgccatgggaatcgccagggcaggcgcccccgg
cgctcctggccgggattcacccccgagcagctggccgagcgcgccgcctccgtcccggcg
atcgtctaccccgatgagctgcccgtcaccgcccgccgcaccgagatcgccgaggccatc
cagcacaaccaggtggtcatcgtggccggggagaccgggagcggcaagaccacgcagatc
cccaagatctgcctggagctcggccgcggcatcaccgggatgatcggccacacccagccc
cgccgcatcgccgcccgctccgtggccgagcgcatcgccgatgagctgggcacccgcatc
tcctccgaggggatcgtcggctaccaggtgcgcttcaccgaggaggtcggggcgcgcacc
ctcatcaagctcatgaccgacggcatcctcctggccgagatccagtccgatcccatgctc
acccgctacgacacgatcatcgtggacgaggcccatgagcgcagtctcaacatcgatttc
atcctgggctacctcgccaggctcctcccgagccgccccggtctcaaggtcatcatcacc
tcggccaccatcgactccgagcgcttcgccgagcacttcggcactgagcgctcgcgcccc
gacggcggcggagcgccggatggcgacgcccgctccgacggcgccgcccccaccccggcc
gcgcgcgtgcccgccccggtcatcgaggtcacgggccgcacctacccggtcgagatccgt
taccggcccttgagcgcggacgagcccgacgacggcgcggacgcagccgatggcaccggc
agagccccgcgggccgggcgcgccaagcggccggagcccgccccccgggaggaccgcgac
caggtcaccggcatcctcgacgccgtcgacgagctcctggccaccggccccggcgacatc
ctcgtcttcctcgcgggcgagcgggacatccgtgacaccgaatcggccctggccgatcac
ctcggaccgcgcctcgccgtcgatgggcgctcacggctgcccggtggggtcgaggtggtg
cccctgtactcgcgcctgagcgccgccgagcagcaccgcgtcttcgagccgcactcgacg
cgccggatcgtcctggccacgaacgtcgccgagacctcgctgacggtgcccggcatccgc
tacgtcgtcgacccgggcctggcccgcatctcgcgctactccaaccgcacgaaggtccag
cgcctgcccatcgagccgatcagccgggccagcgccaaccagcgctcggggcgctgcggg
cgcctggccgacggcgtcgccatccgcctctactccgaggccgatttcggttcccgcccc
gagtacaccgagccggagatcctgcgcacctcgctggccagtgtcatcctgcaaatggcg
gccctggggctcggcgcggtggaggacttccccttcatcgatcccccggaccgccgggcc
gtgcgcgacggcatcgccctgctcgccgagatcggcgcgatcgagcccgacggcgccgca
cgcgccgacgggccgcgcctcaccgccgtcgggcgccgcctggcgcgcctgcccatcgac
ccgcgcctgggccggatgctcctggaggccggcgagctcggctgcgccggggaggtgctc
gtcatcgtcgctgccctgtccatccaggacgtccgcgagcgcccggtggacaagcaggag
gcctccgacgctctgcaccgccgcttcgccgaccccacgagtgatttcctcacctacctc
aacctgtggcgctacctgcgcacgcagtcccgtgagctgtccggctcggcattccggcgc
atgtgccgcgccgagttcctgcactacctgcggatccgcgagtggcaggacgtccacacc
cagctgcggcagatgtcgcggcagctggggctcagcccctcccccgtcgagctgccgacg
gcgcgcgccatccgcgccgccggggcggccctggagcccggctcgcacgccgcccagatc
gcccacggggacgtggcggccgccgtcgtggcgctcgggcgcagcgccgacacccccgac
gccgatgccatccaccgctcgctgctggtggggctgctgtccaatgtgggcaactgggat
gagcggcgccgggagtacgccggggcgaggggcacgcgcttcacgatctggcccggctcg
gggctgcgccgcaagacctacgactgggtgatgacggcggagctggtggagacgtcccgt
ctcttcgcgcgcaccgtggcgaaggtcgacgagcggtggatcgaggaggcggccgagcgg
gcgggcctgctgcgccgcgtctacggcgagccctactggtccacgcgccacggggccgcg
atggtccacgagaaggtcatgctctacgggatgacgctcgtggctgaccgcccctccacg
ctggcgtcggtgggcacggactccgcgcggcaggtggcccgggagatgttcatccgctcc
gggctcgtcgagggcggctggcacgcccggcacggattcgtggagcgcaaccgggagctg
cgcgaggagctggaggatgtggagcggcggcgccgcgagcacggcctgctggccagtgac
gaggcgctgttcgacttctacgacgaccgcctgcccgaggatgtccatggcgccgccgac
ttcgacgcctggtggaagcgggagcggggccgccacccggatctgctggacttcacgcgc
gagctactgctgcccggcgatgacgacgccacgggctacccggacgcctggacgcagggg
gacctgaccctgggcctggagtacgtcttcgagccggggcatcctcacgacggtgtcacc
gtgcgggtgccgatcgaggtgctggggcgcctggagccgaagggcttcgactggctcgtg
ccggggatgcggcccgagctcgtcgtggccacgatccgagcgcttcccaagcgggtgcgc
cgccagctcgtccccgccccggatgtgggcgcgcaggtgtgggcgctcctgcaggaggag
tacccgacgccgcccggcgcctcctgcccggatacccccttcgaggaggccttcgcggct
gcggtggggcgcctgcggggcgtggagatccgcgacgacgactgggccgaggccgccgag
cgcctgcccgatcacctgtcgatcgccttcgtggcgctcgacgcgcgaggaggggttctg
gggcgcggcaaggatctcgtggcgctgcagaggcgcctgtcggggcgcacgcaggaggcc
gtgcgctcggcggtgcacggggcgctcgcccaggcgatggaggaggcgcgggcccgctcc
gacgggcgtgacggatcgcggggcccgggcaagaagaagggcgggcgcggcacgcgccac
ggcaaccagaccgggaagcgcgcccggaacgagccgagtactggcgacggcgcgagccct
gccggcatggcggcgcgcggcgccggctgcgccggaccggccggcgtgagcgcggggctg
gccgagcgggcgggcctggaggagtggccgaacggcctcgccgggctcaccggccgggat
tcctccacgatccccgccacggtggagtccaccggcgtggccgggctcgtcgtgcgaggc
tacccggccctcgtggccagtggcggcgcgacccgactgcgtcccggcggggccgactcg
ggcgacagcgggggacgcgcgccccaggggccctcggcgacaggctcgagcggcagggtc
tcgggaaagggtcgcggcgagaaggcgggcggcaccggcgggggcggcaggcccgcggcc
cccgccgcggatctggtgatcctgtccgacgccgtcgcccaggagcgggagcatcctgcc
ggcgtgatcacgctggcgctggcgcgcgcggcgctgccgacggggcggatcacgagccgc
tggagcggcggggaatcgctcatgctggcggcgagcccctaccggtccaccgaggcgctg
gtcgccgatctccagctggcggcggcgcgcgccgtcgccgagcagtgggcggcccgcacc
ggccgacggctcgccgaggtgcgcgagaaggccgctttcgatgagctcgcgggggcgatg
cgcgaaggcctggaggacgaggtccacaggatcgccctcatcgtggtgcgcgcgctggag
gcgcggcgggaggttcaggacgcggtggatgcgcatacctcgctcgcgctgctgaccacg
ctgcaggaggtgcgcgagcaggccgccgcgctcatcgccgatgggttcatcgccgccgcg
cccgccagccgattgcagcacctgcccaggtacctcaaggcactggcgatgagggtggag
cgggcggcctcctcgccgtcggcggcatcgcaggacgcggccctggcctaccaggcgcgc
gaggccctggccctggtcgagcgggcgcgggagaggagcgccgacctcccgccggacgcg
gcgcgcgaggcggcgctgaccgaggcccgatggatggtggaggaactgcgggtgagcctg
ttcgcccagacgctggggacctcccagaaggtcagcccccagcgcatctccaagctcgtc
gccaccatctag
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