Actinomyces sp. Chiba101: CHIBA101_1346
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Entry
CHIBA101_1346 CDS
T05279
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
actc
Actinomyces sp. Chiba101
Pathway
actc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHIBA101_1346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actc03019
]
CHIBA101_1346
03009 Ribosome biogenesis [BR:
actc03009
]
CHIBA101_1346
Enzymes [BR:
actc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHIBA101_1346
Messenger RNA biogenesis [BR:
actc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHIBA101_1346
Ribosome biogenesis [BR:
actc03009
]
Prokaryotic type
rRNA helicases
CHIBA101_1346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAW93204
LinkDB
All DBs
Position
1598981..1601491
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AA seq
836 aa
AA seq
DB search
MTTQNPSASDEREPLGLDALFSATGEGIASPAAAMTSATGTAVSADSSASAPSFDTPASS
DTPEDPEDVEHEDEEDDVDRARPESDPEDDAPDEAEHADDGADIDEEEVDGHAPFEPSGD
DDDEPEDAARAGGDARAEVTFADLGLPADLLKAVTDMGYKTPTPIQREAIPVLLDGRDVV
GVAQTGTGKTAAFGLPLLDAVDARGGQVQALVLAPTRELALQSADAITDMASRSRGLDVV
AVYGGAPYGPQIGALKSGAQVVVGTPGRIIDLIDKGALVLDAVKYFVLDEADEMLRMGFA
EDVETIAASLPSERRTALFSATMPPAIERVAAEHLVDPARIEVSRQSSTVDTVHQTYAVV
PFRHKIGAVSRVLAVTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERL
VERLRAGTLDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVT
FLTPKEKSKLRQIERLTGTRLEEITLPSPADVSAHRARKLLARAAARHERGRLGMYTPLI
ADTTAELDIDAEELAATLLALAVGDEGPQRRHDDERPRRGRERREVSVDDEGAFVSASFE
GGREGRRRERPEGKPGAARGGRREHEGPGTVYRVEVGHRDRVMPGAIVGALANEGGISGS
DIGKIDILQSFSLVTIHAPLSEDQLEAMRHATFSGRELRIRPDEGPGHGWSGPNDRGRRG
ERDDRGFRGGRGEHGDRGGRRWEDRGDRGYRGRDERGDRDGGYRGRYDDRRGGYRDDRGG
RRWEDRSGRDSGFRDDRGYRSGRDDRGGNRFGGNRGGGYRGNRDNRGSWGSRRDDS
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgactactcagaacccgtccgcctccgatgagcgcgagccgctcggcctcgacgcactc
ttcagcgccaccggggaggggatcgcctcgccggccgcggcgatgaccagcgccaccggc
acggccgtctcagccgactcctccgcctccgcgccctccttcgacacccccgcctcctcc
gacacccccgaggaccccgaggatgtcgagcacgaggacgaggaggacgacgtcgaccgc
gcccggcccgagtccgaccccgaggacgacgcgcccgacgaggccgagcacgcggatgac
ggtgccgacatcgatgaggaggaggtcgacggtcacgcgccattcgagccctccggcgat
gacgatgacgagcccgaggacgccgcccgcgccggtggcgacgcgcgggccgaggtgacc
ttcgccgacctcgggctgcccgccgacctgctcaaagcggtcaccgacatgggttacaag
acccccacccccatccagcgcgaggccatcccggtcctcctggacgggcgcgacgtcgtc
ggcgtggcccagaccggcacgggcaagaccgcagcgttcggcctgccgctcctcgacgcc
gtcgacgcccgtggcggccaggtccaggccctcgtgctggcccccacccgggagctcgcc
ctccagtcggccgacgcgatcacggacatggcgtcgcgctcgcgcggcctcgacgtcgtc
gccgtctacggaggcgccccctacggcccccagatcggcgccctcaagtccggcgcgcag
gtcgtcgtcggcacgcccggccgcatcatcgatctcatcgacaagggcgcgctcgtcctg
gacgcggtgaagtacttcgtgctcgacgaggccgatgagatgctgcgcatgggcttcgcc
gaggatgtggagaccatcgccgcctccctgccctccgagcgccgtaccgcgctgttctcc
gccaccatgccgcccgccatcgagcgggtggcggccgagcacctcgtcgaccccgcgcgc
atcgaggtctcccgccagtcctccaccgtcgacaccgtccaccagacctacgcggtggtc
cccttccgccacaagatcggcgcggtctcccgcgtcctggcggtcaccgaggcggaggcc
gccatcgtcttcgtgcgcaccaagtccaccgctgaggacgtcgccatcgagctggccggg
cggggcatccaggccgccgcgatctccggcgacgtcccccagcgcgagcgcgagcggctc
gtcgagcgactgcgcgccggcaccctcgacgtcctcgtggccaccgatgtggcggcccgc
ggcctggacgtggaccgcatcgggctcgtcgtcaacttcgacgttccccgcgaggcagag
gcctacgtccaccgcatcggacgcaccggccgcgccggccgccacggcgaggccgtcacc
ttcctcacccccaaggagaagagcaagctccggcagatcgagcgcctgaccggcacgcgt
ctggaggagatcaccctgccctcccccgccgacgtctccgcgcaccgcgcccgcaagctc
ctggccagggccgccgcccgccacgagcgcggacgcctgggcatgtacaccccgctcatc
gccgacaccaccgccgagctcgatatcgacgccgaggagctcgcggccacgctgctcgcc
ctcgcggtgggggatgagggaccgcagcgccgtcacgacgacgagcgtccccgccgcggc
cgtgagcgccgcgaggtgagtgtcgacgacgagggggcgttcgtctcggccagcttcgag
ggcggccgcgagggccgccgtcgcgagcgccccgagggcaagcccggcgccgcgcgcggc
gggcgccgggagcacgagggccccggcaccgtctaccgggtcgaggtcggccaccgcgac
cgggtcatgcccggggcgatcgtgggggccctggccaacgagggaggcatctccggctct
gacatcggcaagatcgacatcctgcagtccttctccctcgttaccatccacgcgccgttg
agcgaggaccagctcgaggccatgcggcacgcgaccttctccgggcgcgagctgcgcatc
cgccccgacgagggcccgggccacggctggtccggccccaatgaccgcggccgacgcggg
gagcgggacgaccgcggcttccgcggcggccggggggagcacggcgatcgtggcgggcgc
cgctgggaggaccgcggtgatcgcggctaccgcggccgcgatgagcgcggggaccgcgac
ggcggctaccgcggtcgctacgatgaccgccgcggcgggtaccgggacgatcgcggtggc
cgtcgatgggaggaccgcagcggtcgtgactcgggcttccgggacgaccgcggctaccgc
tccgggcgcgacgaccgcgggggcaaccgcttcgggggcaaccgcggcggcggctaccgc
gggaaccgggacaaccgcggttcctggggctcgcggcgcgatgactcctga
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