Actinomyces sp. Chiba101: CHIBA101_1545
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Entry
CHIBA101_1545 CDS
T05279
Name
(GenBank) ribonuclease, Rne/Rng family domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
actc
Actinomyces sp. Chiba101
Pathway
actc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHIBA101_1545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actc03019
]
CHIBA101_1545
03009 Ribosome biogenesis [BR:
actc03009
]
CHIBA101_1545
Enzymes [BR:
actc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CHIBA101_1545
Messenger RNA biogenesis [BR:
actc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHIBA101_1545
Ribosome biogenesis [BR:
actc03009
]
Prokaryotic type
rRNA processing factors
CHIBA101_1545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BAW93392
LinkDB
All DBs
Position
complement(1825418..1828042)
Genome browser
AA seq
874 aa
AA seq
DB search
MPRAKKTNEAATEAVEPMSAVEPEEVPAAPPRRRRRATAAAAAPETAPAPQAETRAEKSP
RRAPAADGAEGHGVERDGASQEAQPMLPVASLLFQAPDPARARRRRRVSSATTAPQEAPA
AEQSAARGRGADDDASEAVGPQGSDAASEGDAAPAGKGRRRRKATAPASAPEHVEEAAPG
RRRSRRKKAADAPAEAEGSDSQETPVLTEDEPAEPSEGEGDAADDAADSEAGQGRRKRRR
GGRGRRSRGQSAQDPAEEGPDDAPGSESADGAQSDDDRDAGASADGSEDSDGAESAEEGG
SSRRRRRRRSRSRSDREPRESRSKDIRDEVTALKGSTRLEAKRQRRREGRAAGRRRPIVT
EAEFLARRESVDRRMIVREQDGLNQIAVLEDGLLVEHYVARHTQASMVGNIYIGRVQNVL
PSMEAAFVDLGKGRNAVLYAGEVNWDAAGMEGRPRRIEDALSSGDTVLVQVTKDPIGHKG
ARLTSQITLAGRYLVLVPGGTMTGISRKLPDTERARLKKILKRVVPDSAGVIVRTAAEGA
SEEQLAADVKRLVDQWASIDKRAKAVLGGSGKAPVLLKGEPELALRVVRDVFNEDFRQLV
VAGAEAWRTISEYVTELSPDLADRLRHWVEPEDVFTAHRVDEQLAKGFDRKVWLPSGGTL
VIDRTEAMTVIDVNTGRYTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDM
VLESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTPCDCCGGR
GFIVHESPVENQQADMSASGSRSSGRKGRKGKEGAAKSSDRAPGKTGTGRSDQAEDAGDE
AARAAVRGALAQIAAAAEHAHEQSQDASPETDDD
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgccacgagccaagaagaccaacgaagccgcgaccgaggccgtcgagcccatgagcgcc
gtcgagccggaggaggtccccgccgcgcccccgcgccgacgccgcagggcgaccgccgcg
gcggcggccccggagaccgcgcccgccccccaggcggagacccgggcggagaagagcccc
cggcgcgccccggcggccgacggggccgaggggcacggggtcgagcgggacggcgcctcg
caggaggctcagccgatgctgcccgtggcctccctcctcttccaggcgcccgaccccgct
cgcgcgaggcgtcgtcgccgggtctcctcggcgacgacggcaccgcaggaggcgcccgca
gccgagcagtccgccgcccgcgggcggggcgccgatgatgatgcctccgaggccgtcggg
ccgcagggctccgatgccgcctctgagggcgacgccgcgcccgcggggaaggggcgccgc
cgtcgcaaggcgacagccccggcctccgcgcccgagcacgtggaggaggcggcccccggt
cgtcgccgctcgcgcaggaagaaggcggcggacgcccccgccgaggccgagggctccgac
tcccaggagactccggttcttaccgaggatgagcccgcggagccctccgagggcgagggc
gacgctgccgatgacgccgcggactccgaggccgggcagggcaggcgcaagcgccgtcgc
gggggccgcgggcgccgctcccgggggcagtcggcccaggaccccgccgaggagggcccc
gacgatgcccccggctccgagagcgccgatggcgctcagtccgacgacgaccgggacgcg
ggcgcgtccgcggatggctcggaggactccgatggcgctgagagcgctgaggagggcggt
tcctcgcgccgccgccgtcgccgccgctcgcgcagccgttccgaccgcgagccccgcgag
agccggagcaaggacatccgcgatgaggtcacggccctcaagggctccacgcgcctggag
gccaagcgccagcggcgccgggagggccgtgccgccggccggcgtcgcccgatcgtcacc
gaggccgagttcctggcccggcgcgagagcgtcgaccggcgcatgatcgtgcgcgagcag
gatgggctcaaccagatcgcggtgctggaggacggcctgctcgtcgagcactacgtcgcc
cgccacacgcaggcctcgatggtcgggaacatctacatcggccgtgttcagaacgtcctg
ccctcgatggaggcggccttcgtcgatctcggcaagggccgcaacgccgtgctctacgcc
ggcgaggtcaactgggacgccgcgggcatggagggcaggccccgccggatcgaggacgcc
ctgtccagcggtgacacggtcctcgtccaggtcaccaaggaccccatcggtcacaagggg
gcgcggctgaccagccagatcaccctggccggccgctacctcgtcctcgtgccgggcggc
acgatgaccggtatctcgcgcaagctgcccgacaccgagcgggcccgcctcaagaagatc
ctcaagcgggtcgtccccgactccgccggcgtcatcgtgcgaacggccgccgagggcgcc
tcggaggagcagctcgccgcggacgtcaagcgactcgtggaccagtgggcctcgatcgac
aagcgcgccaaggccgtcctgggcggctcggggaaggccccggtcctcctcaagggcgag
ccggagctcgcgctgagggtcgtccgcgatgtcttcaacgaggacttccgccagctcgtc
gtggctggggcggaggcctggcgaaccatctccgagtatgtcaccgagctcagccccgat
ctcgccgatcggctgcgccactgggtggagccggaggacgtcttcaccgcccaccgcgtc
gatgagcagctcgccaagggcttcgaccgcaaggtctggctgcccagcggcggcaccctc
gtcatcgaccggacggaggccatgaccgtcatcgacgtcaacaccggccgctacaccggc
gccggcggcactctggaggagacggtcacccgcaacaacctcgaggcggccgaggagatc
gtccgccaactgcgcctgcgcgacatcggcggcatggtcgtcatcgatttcgtcgacatg
gtcctggagtccaaccgggacctggtgctgcgccgcctcgtggagtgcctgggccgggac
cgcacccgccaccaggtcaccgaggtcacctccctcggccttgtgcagatgacccggaag
cgcgtcggccagggcctggtcgaggccttctccacgccctgcgactgctgcgggggccgc
ggcttcatcgtccacgagagccccgtcgagaatcagcaggcggacatgtccgcctcgggc
tcccgctcatcgggccgcaaggggcgcaagggcaaggagggcgcggcgaagtcctccgac
cgcgccccgggcaagaccggcaccggtcgctccgaccaggccgaggatgccggtgacgag
gcggcccgcgccgccgtccgcggcgccctcgcccagatcgccgccgccgccgagcacgcg
cacgagcagtcgcaggacgcctccccggagaccgacgacgactga
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