Actinomyces sp. Chiba101: CHIBA101_2143
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Entry
CHIBA101_2143 CDS
T05279
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actc
Actinomyces sp. Chiba101
Pathway
actc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHIBA101_2143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actc03400
]
CHIBA101_2143
Enzymes [BR:
actc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHIBA101_2143
DNA repair and recombination proteins [BR:
actc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHIBA101_2143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_16
AAA_22
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
BAW93972
LinkDB
All DBs
Position
complement(2526682..2530398)
Genome browser
AA seq
1238 aa
AA seq
DB search
MRLTALLPPLLADPAIAGLVRAAAGAGRGENSAVVAPGARPAILAAMAMGERGVARAVGA
GTGSGAEPGATGADAEGSPLLVVTATGREAEELAAALGCYLPPADIAVLPAWETLPHERL
SPRADTVATRLAVMRRLAHPAEAPTSDGGSADGPIRVLIIPVRALLAPVIDGLGEIEPIR
LAPGPSDGLEAIAARLADAAYTRVDMVESRGEFAVRGGILDVFPPTLPRPVRVDFFGDDI
ESVSSFAVADQRTVEELSGATLHPCRELLLTDAVRERARALTGAIPGAADMLGKIAEGIP
CEGMESLAPVLAPRMVPVLDLVGDRLVVALEPERIRRRAEDLVATTSEFLAAAWTSAASG
GTVPVDLSAAAFASLGEARALALSTNLGWWSFTSLAASPDVTAPALRDPEGYRGRLDEAV
KDLGRMAREGWSVVVATDGPGPGRRMAQLLADGDVPARIVTQLDEPADLGWSAAEGPRGD
GVVRITQASAGHGFIATGQRLALIAESDLTGRASTGPRGPKALPARRSRKSVDPLSLHPG
DLVVHAQHGVGRFVELRRRAVGTGKSAATREYLVIEYAPSKRGQPGDRLMVPTDSLDQVT
KYVGGDAPALNRMGGADWARTKSKARRAVREIAGELVRLYAARAAAAGHAFGPDTPWQAE
LEEAFPYTETPDQLATIDDVKADMERPRPMDRLIMGDVGYGKTEVAVRAAFKAVADGKQV
AVLAPTTLLVSQHAETFAERYAGFPVRVAQLSRFQSEAESAQVLAGLADGSIDVVVGTHR
LITGQVRFKDLGLLIIDEEQRFGVEHKEALKALRTDVDVLAMSATPIPRTLEMAVTGIRE
MSTLATPPEDRHPILTYVGAWETKQVGAAIRRELLRDGQVFLVHNRVSDIDRVAAQVAEL
VPEARVATAHGQMSEARLEAVIDDFWHKEIDVLVCTTIVETGLDVPNANTLIVDRADRFG
LSQLHQLRGRVGRGRERAYAYFLYPADKPLTETALERLRTIATNTDLGAGMQVAMKDLEI
RGAGNLLGGEQSGHIAGVGFDLYVRMVSDAVAAYKRSLGMGEGAGAAADDDEAELRIELP
VDATIPEDYVPHERLRLEAYTKFAAARSDEQVADVLDELADRYGPVPEPVARLAALARLR
ALAAGVGVREIVAQGKSIRFAPVELPESGRMRLTRLYPGTTIKPATRTIVVPAPGAARMG
GGPIEGEALLRWAEVLLRAVVAGEADYEAEAAAYRRRR
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
gtgcgactgaccgccctcctccccccgctcctggccgaccccgcgatcgccgggctcgtg
agagccgccgccggcgccggacgaggcgagaacagcgccgtcgtcgcccccggggcgcgc
cccgcgatactcgcggccatggcgatgggggagcgcggcgtcgcccgcgccgtgggcgcg
ggcacgggatccggggccgagccgggcgccaccggcgcagatgccgagggctcgccgctg
ctcgtcgtcaccgccaccggccgcgaggccgaggagctcgccgccgccctcggctgttac
ctgccgcccgccgacatcgcagtcctccccgcctgggagaccctgccccacgagcgcctc
tcgccgcgtgcggacaccgtggccaccaggctcgcggtcatgcgccgcctcgctcacccc
gccgaggcgcccacgagcgacggcggcagcgccgacggccccatccgcgtcctcatcatc
cccgtccgcgcgcttctggcgcccgtcatcgacggcctgggcgagatcgagcccatccgg
ctcgcccccggccccagcgacggcctggaggccatcgcggcccgcctggccgacgccgcc
tacacccgggtggacatggtggagtcgcgcggcgagttcgccgtgcgcggcggcatcctc
gacgtcttccccccgacactgccgcgccccgtgcgcgtcgacttcttcggcgacgacatc
gagtccgtctcctccttcgccgtcgccgaccagcgcaccgtggaggagctgagcggcgcc
accctccacccctgccgcgagctgctcctcaccgacgccgtgcgggagcgggcccgggcg
ctgaccggggcgatcccgggagccgccgacatgctcggcaagatcgccgagggcatcccc
tgcgagggcatggagtccctcgcccccgtgctcgccccccgcatggtgcccgtcctcgac
ctcgtcggggatcggctcgtcgtcgccctggagcccgagcgcatccgcaggcgcgccgag
gacctcgtggccaccacctccgagttcctcgccgccgcctggacctccgccgcctccggc
ggcaccgtccccgtggacctgtccgccgccgccttcgcgagcctcggcgaggcccgggcg
ctggccctgtccaccaacctgggctggtggtcgttcacctcgctcgccgcctccccggac
gtcacagcgccggcgctgcgcgacccggagggctaccgggggcgcctcgacgaggccgtc
aaggacctcggccgcatggcccgcgagggctggagcgtcgtcgtcgccaccgacggcccc
gggcccggccgccgcatggcccagctcctcgccgacggcgacgtccccgcccgcatcgtc
acccagctcgacgaacccgccgacctggggtggtcagccgccgaggggccgcggggcgac
ggcgtcgtgcgcatcacccaggcctccgccgggcacggcttcatcgccaccgggcagcgc
ctcgccctcatcgccgagtcggacctcaccgggcgcgcctccaccggcccgcgcggcccc
aaggccctgcccgcccgccgctcccggaaatccgtcgaccccctgtccctccaccccggc
gacctcgtcgtccacgcccagcacggcgtcgggcgcttcgtcgagctgcggcgccgcgcc
gtcggcacgggcaagagcgccgccacccgcgagtacctcgtcatcgagtacgcgccctcc
aagcgcggccagcccggcgaccggctcatggtccccaccgactccctcgaccaggtcacc
aagtacgtcggcggggacgcgccggccctgaacaggatgggcggcgccgactgggccagg
acgaagtccaaggcgcgcagggccgtccgcgagatcgccggcgagctcgtgcgcctctac
gccgcccgcgccgccgccgcggggcacgccttcggccccgacacaccctggcaggccgag
ctcgaggaggccttcccctacaccgagacccccgaccagctggccaccatcgacgacgtc
aaggccgacatggagaggccccggcccatggaccgcctcatcatgggcgacgtcggctac
ggaaagaccgaggtcgccgtgcgcgccgccttcaaggccgtggccgacggcaagcaggtc
gcggtcctggcccccacgaccctgctggtcagtcagcacgccgagaccttcgccgagcgc
tacgccgggttccccgtgcgcgtcgcccagctctcccgcttccaatccgaggccgagtcc
gcccaggtcctggccgggctcgccgacggctccatcgacgtcgtcgtcggcacccaccgc
ctcatcaccgggcaggtgcgcttcaaggacctcggcctgctcatcatcgacgaggagcag
cgcttcggcgtcgagcacaaggaggccctcaaggccctgcgaaccgacgtcgacgtgctg
gccatgtccgccacgcccatcccccgcaccctggagatggcggtgaccggcatccgcgag
atgtccaccctggccaccccgcccgaggaccgccaccccatcctcacctacgtgggcgcc
tgggagaccaagcaggtcggcgccgccatccgccgcgagctcctgcgcgacgggcaggtc
ttcctcgtccacaaccgcgtctccgacatcgaccgcgtcgccgcccaggtcgccgagctc
gtccccgaggcgcgcgtggccaccgcccacgggcagatgagcgaggcccggctcgaggcc
gtcatcgacgacttctggcacaaggagatcgacgtcctcgtgtgcacgacgatcgtcgag
accggcctggacgtccccaacgcgaacaccctcatcgtcgaccgcgccgaccgcttcggc
ctgtcccagctccaccagctgcgcgggcgcgtgggacgggggcgcgagcgcgcctacgcc
tacttcctctaccccgcggacaagccgctgaccgagaccgccctggagcgcctgcgcacc
atcgccaccaacaccgacctgggcgccggcatgcaggtggccatgaaggacctggagatc
cgcggcgccgggaacctgctgggcggggagcagtccggccacatcgccggggtcggattc
gacctgtacgtgcgcatggtctccgacgctgtcgccgcctacaagcgctccctggggatg
ggggagggagccggggcggcggcggacgacgacgaggccgagttgcgcatcgagctgccc
gtggacgccaccatccccgaggactacgtgccccatgagcgcctgcgcctggaggcctac
acgaagttcgccgccgcccgcagcgatgagcaggtggccgacgtgctggacgagctcgcc
gaccgctacgggcccgtgcccgagccggtggcgcgcctggccgcgctggcccgcctgcgc
gctctcgcggccggtgtcggcgtgcgcgagatcgtggcgcagggcaagtccatccgcttc
gcgcccgtggagctgcccgaatccggccggatgaggctcacccgcctctacccgggcacg
acgatcaagcccgccactcgcaccatcgtggtgcccgcacccggcgcggcgcgcatgggc
ggcgggccgatcgagggggaggccctcctgcgctgggccgaggtgctgctgcgcgccgtc
gtggcgggcgaggccgactacgaggccgaggccgccgcctaccggcgccgccgctga
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