Actinoplanes sp. OR16: ACTI_28300
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Entry
ACTI_28300 CDS
T10317
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acte Actinoplanes sp. OR16
Pathway
acte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACTI_28300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acte03400
]
ACTI_28300 (mfd)
Enzymes [BR:
acte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACTI_28300 (mfd)
DNA repair and recombination proteins [BR:
acte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACTI_28300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBH66145
UniProt:
A0A3T1ATH1
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Position
3057136..3060768
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AA seq
1210 aa
AA seq
DB search
MQLAGLIPAALRDRGLARARDLARKSHVDSDSLDLTAPVSLRPFVVATVAGEAQSGGDQF
GGAGRPVLAVTATSREADDLADALGCLIDADRIAVYPSWETLPHERLSPRSDTVGKRLAV
LRRLAHPGEHPLQVVVAPVRSLLQPQLKGLGDLEPVELVTGGGAELEDVARRLSDMAYAR
VDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDDVEEIRTFAVADQRTIEAVPRLWAP
PCRELLLTPDVRARAAELAAEHPELAEILDKLAEGIPVEGMESLAPALLRGTDSMELLID
CMPAGTHVLLCDPERIRTRAHDLTRTSDEFLEASWAAAAVGGQAPIDVGAVAFRSLADVR
AHAATLKQPWWTLSPFGLAPSSDSAGEALPWEDPASSVEVSPDSGDAIALAAQPVPLYHG
DTAKLAGDLAGWAKAGWAVALVFEGKGTAQRATELLRDAGLGVTPVDAITDPIEDGQLLV
TCGGLNHGFVDEASRLAVITGNDISGGRGASTKDMRKMPARRRNTIDPLELKTGDFVVHE
QHGIGRYIELVQRTVNGADREYLVIEYAASKRGQPGDRLYVPTDQLDQLSRYVGGESPSL
HKMGGADWQKSKARARKAVKEIAAQLIQLYAARQASQGHAFGPDTPWQRELEDAFPYTET
PDQLAAIHEVKDDMQKPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA
QQHFNTFTERMSQFPVQIKQLSRFQTPKETALTLEGAAAGTVDIVIGTHRLLAKSTRFKN
LGLIIVDEEQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEE
RHPVLTYVGAYDEKQVAAAIHRELLRDGQVFYLHNRVESIDRAARKLRELVPEARVAVAH
GQMSEEQLEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLILERADLLGLAQLHQIRGR
VGRGRERAYAYFLYPREKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGE
QSGHIEGVGFDLYVRMVGEAVQAFKGERPEEEPEVKIDLPIDAHLPTDYIAVERLRLEMY
RKLAESRDEARLAEVVAEMTDRYGEPPAPVANLIAVARFRLLVRAYGLTDVSMQGKHIRF
SPLALPDSKQMRLKRYHPDSVYKLATDQVSVPRPSTRRLGGEPLRDQALLEWCAQLLKDV
LGEVPAPVRA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgccggtctcattcctgccgcgctgcgtgatcgtggtctcgcccgggcgcgc
gatctggctcgcaagagccacgtcgactccgactcgctggatctcaccgcgccggtgtcg
ctgcgcccgttcgtggtggcgacggtggccggggaggcccagtccggtggggaccagttc
ggaggggcggggcgcccggtcctcgcggtgaccgcgacgtcccgcgaggccgacgacctc
gccgacgcgctcggctgcctgatcgacgccgaccggatcgccgtctacccctcctgggag
accctgccgcacgagcggctctcgccccgctcggacaccgtcggcaagcggctggccgtg
ctgcgccggctcgcccaccccggcgagcacccgctgcaggttgtcgtcgcgccggtccgt
tcactgctgcagccgcagctcaagggcctcggcgacctggagccggtggagctcgtcacc
ggcggcggcgccgagctggaggacgtggcccggcggctctccgacatggcgtacgcgcgg
gtcgacctggttaccaagcgcggcgagttcgcggtccgcggcggcatcctcgacgtcttc
ccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgacgtcgaggagatc
cgcaccttcgcggtcgccgaccagcggaccatcgaggccgtgccgcggctctgggcgccg
ccctgccgcgagctgctgctcacccctgacgtgcgggcccgggccgccgagctggcggcc
gagcaccccgagctggccgagatcctggacaagctggccgagggcatcccggtcgagggc
atggagtcgctcgcgcccgctctgctgcgcggcaccgacagcatggagctgctgatcgac
tgcatgccggccggcacccacgtgctgctctgcgacccggagcggatccggaccagggcg
cacgacctcacccgtacgtccgatgaattcctcgaagcctcctgggccgcggccgccgtc
ggcgggcaggcgccgatcgacgtcggagcggtggccttccggagcctcgcggacgtccgg
gcgcacgctgccacgctgaagcaaccctggtggacgctgtcgccgttcggcctggcccct
tcctccgactccgccggagaggccctcccgtgggaggacccggcgtcgtcggtcgaggtc
tcgccggactccggtgacgcgatcgcgctggccgcgcagccggtgccgctctaccacggc
gacaccgcgaagctcgccggcgacctggccgggtgggccaaggccggctgggcggtcgcg
ctggtcttcgagggcaagggcaccgcgcagcgggccaccgagctgctccgcgacgccggc
ctcggcgtcaccccggtcgacgccatcaccgacccgatcgaggacggtcagctgctggtc
acctgcggcggcctcaaccacggtttcgtcgacgaggcgtcccggctcgcggtgatcacc
ggcaacgacatctccggcggccgtggcgcgtcgaccaaggacatgcgcaagatgccggcc
cgccggcgcaacaccatcgacccgctggagctgaagaccggcgacttcgtggtgcacgag
cagcacggcatcgggcgctacatcgagctggtgcagcgcaccgtcaacggcgccgaccgg
gaatacctggtcatcgagtacgccgcctccaagcgcggccagcccggcgaccggctctac
gtgcccaccgaccagctcgaccagctctcccgctacgtcggtggtgagtcgccgagcctg
cacaagatgggcggcgccgactggcagaagagcaaggcccgggcccgcaaggcggtcaag
gagatcgccgcgcagctgatccagctctacgcggcccggcaggcgtcgcaggggcacgcc
ttcggcccggacacgccgtggcagcgggagctggaggacgccttcccgtacaccgagacc
cccgaccagctcgccgcgatccacgaagtgaaggacgacatgcagaagcccgtcccgatg
gacaggctgatctgcggcgacgtcggttacggcaagaccgagatcgcggtgcgggcggcg
ttcaaggcggtgcaggacggcaagcaggtggccgtgctggtgcccaccacgctcctcgcc
cagcagcacttcaacacgttcaccgagcggatgagccagttcccggtgcagatcaagcag
ctgtcccggttccagacgccgaaggagaccgccctcaccctggaaggcgccgccgccggc
accgtcgacatcgtgatcggcacgcaccggctgctcgccaagtccacccgcttcaagaac
ctcggcctgatcatcgtggacgaggagcagcggttcggcgtcgagcacaaggagcagctg
aaggcgctgcgcgcgtcggtggacgtgctgaccatgtcggccaccccgatcccgcggacc
ctggagatggcgatcaccggcatccgtgagatgtccacgatcgccactccgcccgaggag
cggcaccccgtcctgacgtacgtcggggcgtacgacgagaagcaggtcgccgccgccatc
caccgtgagctgctccgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatc
gaccgcgcggcccgcaagctgcgtgagctggtccccgaggcgcgggtcgcggtggcgcac
ggccagatgagcgaggaacagctcgagaaggtgatggtcgggttctgggagaaggagttc
gacgtcctggtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgcgaacacg
ctgatcctggagcgcgccgacctgctcggtctcgcccagctgcaccagatccgcggccgg
gtcggccggggccgggagagggcgtacgcgtacttcctctacccgagggagaagccgctc
accgagcacgcccacgagcggctcgccaccatcgcccagcacaccgagctcggcgccggc
atgtacgtcgcgatgaaggacctggagatccgcggcgccggcaacctgctcggcggcgag
cagtccggccacatcgagggcgtcggattcgacctctacgtgcggatggtcggcgaggcg
gtgcaggccttcaagggggagcgccccgaggaggagcccgaggtcaagatcgacctcccg
atcgacgcgcacctgcccaccgactacatcgccgtcgagcgcctgcgcctggagatgtac
cgcaaactcgccgagtcccgtgacgaggcccggctcgccgaggtcgtcgccgagatgacc
gaccggtacggcgagccgccggccccggtcgccaacctcatcgcggtggcgcgattccgg
ctgctggtccgggcgtacgggctgaccgacgtgtcgatgcagggcaagcacatcaggttc
tccccgctggccctgccggactcgaagcagatgcggctcaagcggtaccacccggactcg
gtctacaagctcgccaccgaccaggtcagcgtgccccggccgagcacccggcggctcggc
ggcgagccgctgcgcgatcaggctctgctggagtggtgcgcccagttgctgaaggacgtc
ctcggcgaggtgcccgccccggttcgcgcctga
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integrated database retrieval system
