Actinoplanes sp. OR16: ACTI_42720
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Entry
ACTI_42720 CDS
T10317
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acte Actinoplanes sp. OR16
Pathway
acte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACTI_42720 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acte03019
]
ACTI_42720 (cshA)
03009 Ribosome biogenesis [BR:
acte03009
]
ACTI_42720 (cshA)
Enzymes [BR:
acte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACTI_42720 (cshA)
Messenger RNA biogenesis [BR:
acte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACTI_42720 (cshA)
Ribosome biogenesis [BR:
acte03009
]
Prokaryotic type
rRNA helicases
ACTI_42720 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBH67587
LinkDB
All DBs
Position
complement(4642731..4644389)
Genome browser
AA seq
552 aa
AA seq
DB search
MTVSGFADLQLRPELLRALTDLGYEEPTPIQAESIPPLLEGRDLLGQAATGTGKTAAFAL
PVLQRLAGRDDADTPAALVLVPTRELAMQVSQAFHRYARDLGARVVPIYGGQPIGRQLQA
LERGVDVVVATPGRALDHISRGTLDLSGVRTVVLDEADEMLDMGFAEDIEAILVETPEER
QTVLFSATMPGRIDAIARRHLREPVRIQMGRAEPEPGEAPLVRQSAYVVARAHKPAALGR
VLDVEAPTAAIVFCRTREEVDQLTETLNGRGQRAEALHGGMSQEHRDRVVNRLRDGRADL
LVATDVAARGLDIDRLSHVVNYNLPAAPETYVHRIGRVGRAGREGTAITLAEPREHRMLK
AVERTTGQRIALQKVPTVADLRARKLELTRAALQESLLTDDLERFRVVVETLTDEFDVME
VALAAVKLAHEMNGGDLDDEQDIPEFTLRPDRDRKDANSRPGARKGVNTTRVFINSGRSN
RIRPQDLVGAITGETRLSGRDIGAIEIADRFSLVEVPADAADEVITALRHASIRGRKVLA
RRDRDKDNSRRP
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgtccgggttcgccgacctccagctgcgtcccgagctgctgcgagcactcacc
gacctcgggtacgaggagcccacgccgatccaggccgaatcgatcccacccctgctcgaa
gggcgtgacctgctgggacaggccgcgaccggcacgggcaagaccgctgctttcgcgctg
ccggtgctgcagcgcctggccggccgggacgacgccgacaccccggccgccctggtgctg
gtgccgacgcgtgagctcgccatgcaggtctcccaggcctttcatcggtacgcacgagac
ctcggtgcgagggtcgtcccgatctacggcgggcagccgatcggccgtcagctccaggcc
ctggagcgcggtgtcgacgtggtggtcgccacaccgggccgtgccctcgatcacatctcc
cgtggcacgctcgacctgagcggcgtccgcacggtcgtgctcgacgaggccgacgagatg
ctcgacatgggcttcgccgaggacatcgaggcgatcctcgtggagaccccggaagagcgg
cagacggtgctcttctcggcgaccatgccgggccggatcgacgcgatcgcccgccggcat
ctgcgcgagccggtccgcatccagatggggcgtgccgagccggagccgggcgaggcccct
ctcgtacggcagagcgcctatgtggtggcccgcgcgcacaagccggccgccctcggccgg
gtcctcgacgtggaggcgccgaccgcggcgatcgtcttctgccgcacccgcgaagaggtc
gaccagctcaccgagacgctgaacgggcgtggccagcgggccgaggcgctgcacggcggg
atgagccaggagcaccgcgaccgggtggtgaaccggctgcgcgacggccgggccgacctg
ctcgtcgccaccgacgtggcggcccgcggcctggacatcgaccggctcagtcacgtggtg
aactacaacctgccggccgccccggagacgtacgtgcaccgcatcggccgggtcggccgc
gccggccgggagggcaccgcgatcaccctggccgagccgcgtgagcaccggatgctcaag
gcggtcgagcggaccaccgggcagcggatcgccctgcagaaggtgccgaccgtcgccgac
ctgcgcgcccgcaagctggaactcacccgggcggccctgcaggagagcctgctcaccgac
gacctggaacgcttccgggtggtggtggagacgctcaccgacgagttcgacgtcatggag
gtggcgctcgccgcggtgaagctggcccacgagatgaacggcggcgacctcgacgacgag
caggacatcccggagttcacgctgcgtccggatcgggatcggaaggacgcgaactcccgc
ccgggcgcccgcaagggggtcaacaccacccgggtgttcatcaactcgggccgcagcaac
cggatccggccgcaggacctggtcggcgccatcaccggggagacccggctgagcgggcgg
gacatcggggccatcgagatcgcggaccggttctcgctggtggaggtgccggccgacgcc
gccgacgaggtcatcaccgcgctgcggcacgcctcgatccggggccgcaaggtgctggcc
cgccgcgaccgcgacaaggacaacagccgccggccctga
DBGET
integrated database retrieval system
