Actinoalloteichus sp. GBA129-24: UA75_12040
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Entry
UA75_12040 CDS
T04619
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acti
Actinoalloteichus sp. GBA129-24
Brite
KEGG Orthology (KO) [BR:
acti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acti03019
]
UA75_12040
Enzymes [BR:
acti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UA75_12040
Messenger RNA biogenesis [BR:
acti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UA75_12040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
AAA_25
T2SSE
AAA_30
NTPase_1
AAA_16
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
APU20420
LinkDB
All DBs
Position
complement(2697963..2701865)
Genome browser
AA seq
1300 aa
AA seq
DB search
MRTPPVTSPLTELSARLPELMLRDRHRLARRLDGLRRGRDSRGAARDAALAAVAAEIDAA
ALRVERRRAAVPKIDYPAELPVGQRKDEILAAVRDHQVVILAGETGSGKTTQLPKICLEL
GRGVHGLIGHTQPRRLAARTVAERIAEELHGELGDAVGYAVRFTDRVGEDTLVKLMTDGI
LLAEIQRDRMLRQYDTIIIDEAHERSLNIDFLLGYLKDLLPRRPDLKVIITSATIDPERF
SRHFGDAPMIEVSGRTYPVEVRYRPVVTDEVERDQVQAICDAVDELAGEAPGDVLVFLSG
EREIRDTADALEKQELRNTEVVPLYARLSAREQHRVFQPHTGRRIVLATNVAETSLTVPG
IKYVVDPGTARISRYSLRTKVQRLPIEAISQASANQRSGRCGRLSAGVCIRLYSEEDYLA
RPEFTDPEILRTHLASVILQMSALGLGDVAAFPFVDPPDRRNISDGVQLLQELGALDPAE
TDLRKRLTPLGRRLAQLPVDPRLGRMVLEGERNGCLREVMVIAAALSIQDPRERPEDKQQ
AAAEQHARFVDKNSDFVSLLNLWEYLQEQQKESSSSRFRRMCRTEFLNYLRVREWQDVYG
QLRQVARTLGTTLNDVPADHDRVHQALLTGLLSQVGLKDTDKNEYLGARNAKFAIFPGSA
LFKKPPRWVMAAELVETSRLWGRIAGRVEPDWIEKAAGTLVRRSYSEPHWEKKQAAVIAL
ERVTLYGIPLVAGRKVNFGRIDPETSRDLFIRHALVEGDWETRHRFFHENRELLAEVEDL
EHRARRRDILVDDETLFEFYDQRIPADVVSGRHFDSWWKKTRHDKPDLLTFDRSMLVNEQ
AAGIGEADYPDSWPQGDLRLKLTYQFEPGTDADGVTVHIPLAVLNQVTETGFDWQIPGLR
AELVESLLRSLPKPLRRHVVPVPDCAAAVLHRMRAGEAPLLDSLEDALRRQVGVVVPRDA
WQLDRVPDHLKITYRVVDERQQTLAEGRDLAELRERLRPRLRATLSASAEGVEQSGLRDW
TIGDLAKTHRTRQAGYLVTSYPALVDEGDEVAVRLFDSEAEQRQAMWAGTRRLVLLNAPA
PIKLIQGRLSNQTKLALTHNPHGGVGALLADCASCAADRLITRHGGPAWSTAAFATLRGK
VRAELPPLMTDVVGKVEEILTEWRAVELRLKEVARHAPKDSVADIRTQLDGLVFPGFVTA
VGAQRLPHVVRYLRGIARRLEKLPENPARDQDWTAKVAVVTEAYQRLAVRVPATASPGKG
LREVRWAIEELRLSYFAQTIKTAFPVSDKRIMKALEQLES
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgccgcctgtcacctctcccctcaccgaactgtcggcacgcctgcccgagttg
atgctgcgggaccgacatcgcctcgcgcggcgcctggacggcctgcggcgcggacgcgac
tcccgaggcgccgcccgagacgcggcgctcgccgccgtcgccgccgagatcgacgcggcc
gcgctgcgggtggaacgtcgccgtgccgccgtgccgaagatcgactaccccgccgagctg
ccggtcggacagcgcaaggacgagatcctggcggccgtccgcgatcaccaggtggtgatc
ctggcgggcgagaccgggtcgggcaagaccacgcagctgcccaagatctgtctcgagctc
ggccggggcgtgcacgggctgatcggccacactcagccgaggcggctggccgcccgcacc
gtcgccgagcgcatcgccgaggagctgcacggcgagctgggcgacgcggtgggttacgcg
gtgcgcttcaccgaccgggtcggcgaggacacgctcgtcaagctgatgaccgacggcatc
ctgctcgcggagatccaacgggatcggatgctgcggcagtacgacacgatcatcatcgac
gaggcgcacgagcgcagcctcaacatcgacttcctgctcggctatctcaaggacctgctg
ccgcgcagacccgacctcaaggtgatcatcacctccgcgacgatcgacccggagcggttc
tcccgacacttcggcgacgcaccgatgatcgaggtgtcgggtcggacctatccggtggag
gtccggtaccgaccggtcgtcaccgacgaggtcgaacgcgaccaggtgcaggcgatctgc
gacgcggtggacgagctggcgggcgaggctcccggcgacgtcctggtcttcctcagcggc
gaacgggagatccgggacaccgccgacgcgctggagaaacaggagctgcgcaacaccgag
gtggtgccgctctacgcccggttgtcggcccgcgagcagcaccgggtgttccagccgcac
accggtcggcgcatcgtcctggccaccaacgtggccgagacctccctgaccgtgccgggc
atcaagtacgtcgtcgaccccggcaccgccaggatctcccggtacagcctgcggacgaag
gtgcagcggctccccatcgaggcgatctcgcaggcgtcggccaaccagcggtccggccgc
tgcggcaggctctcggcgggggtgtgcatccggctgtactcggaggaggactacctcgcc
cgtccggagttcaccgatcccgagatcctgcgcacccatctggcctcggtgatcctgcag
atgagcgcgctgggactcggcgacgtggcggcgttccccttcgtcgatccgcccgaccgg
cgcaacatctccgacggcgtgcagctcctccaggagctcggtgcactggacccggccgag
accgacctgcgcaagcggctcactccgctcggtcgcaggctcgcgcagcttccggtggac
ccccggctgggccggatggtgttggagggcgaacgcaacggctgtcttcgcgaggtgatg
gtgatcgccgccgcgctgtccatccaggaccccagagagagaccggaggacaagcagcag
gcggcggccgagcagcacgcgcggttcgtcgacaagaactccgacttcgtgtccctgctg
aacctgtgggagtacctgcaggaacagcagaaggagtcctcctccagccggttccgccgg
atgtgccgcaccgagtttctgaactaccttcgcgtccgtgagtggcaggacgtctacggc
cagcttcgtcaggtggccaggaccctgggaacgaccctcaacgacgtgcccgccgaccac
gatcgagtacatcaggcgctgctgacgggcctgctctcccaggtggggctgaaggacacc
gacaagaacgagtacctgggcgcccgcaacgccaagttcgcgatcttccccggctcggcg
ctgttcaagaagccgccgcgttgggtaatggcggccgagctggtcgagacgtcgcggctg
tggggtcgcatcgcaggccgggtggagccggactggatcgagaaggcggcaggcactctg
gtgcggcgcagctacagcgagccgcactgggagaagaagcaggccgccgtgatcgcgctc
gaacgcgtgacgctctacggcatcccactggtcgcgggccgcaaggtgaacttcggacgg
atcgatccggagacctccagggacctgttcatccgacacgccctcgtggaaggcgactgg
gagacccgccaccggttcttccatgagaaccgggagctgctcgccgaggtcgaggacctg
gagcatcgggctcgccgccgggacatcctggtcgacgacgagaccctgttcgagttctac
gaccagcgcatccccgccgacgtcgtctccggcaggcacttcgactcctggtggaagaag
accaggcacgacaagcccgatctgctgaccttcgaccggtcgatgctcgtcaacgagcag
gccgcaggcatcggcgaggccgactacccggacagctggccgcaaggcgaccttcggctg
aagctgacctaccagttcgagccgggcaccgacgcggacggcgtgaccgtgcacatcccg
ctcgccgtgttgaaccaggtgacggagacgggcttcgactggcagatccccggactgcgt
gccgagctggtggagtcgctgctgcggtcgctgcccaagccgctgcgcaggcacgtcgtc
ccggtgccggactgcgcggcggcggtgctgcatcggatgcgagccggtgaggcgccgctg
ctggactccctggaggacgcgctgcgcaggcaggtgggcgtggtggtgcctcgagacgcc
tggcagctcgaccgcgtgccggatcacctgaagatcacctaccgagtggtggacgagcga
cagcagaccctcgccgagggacgcgacctggcagagctgcgcgagcgactgcgccccagg
ctccgggcgaccttgtctgcctcggcagagggcgtggagcagtcggggctgcgggactgg
accatcggcgacctggccaagacgcaccgcacgcggcaggcgggctatctggtgacctcc
tatccggcgctggtcgacgagggcgacgaggtggcggtccggctgttcgactccgaggcg
gagcaacggcaggcgatgtgggcggggacccgacgactggtcctgctgaacgccccggcg
ccgatcaagttgatccaaggcaggctgagcaaccagacgaagctggcgctgacccacaat
ccgcacggcggagtgggagccctgctggcggactgcgcgtcgtgtgcggcggaccggctg
atcaccaggcacggcggtcccgcctggtccacggcggccttcgcgaccctgcgcggcaag
gtgcgtgccgagctgcccccgctgatgacggacgtggtgggcaaggtcgaggagatcctc
accgagtggcgcgcggtggaactgcggctgaaggaggtcgcccggcacgcgccgaaggac
tcggtcgccgacatccgcacgcagctcgacgggctggtgttccccggcttcgtcaccgcc
gtcggcgctcagcggctcccgcatgtggtgcgttatctgcgggggatcgcacgacggctg
gagaagctgccggagaacccggcgcgggaccaggactggacggccaaggtcgccgtcgtc
accgaggcctatcaacggctcgcggtcagggtgcccgcgacggcgtcgcccggcaagggg
ctccgggaggtccgctgggcgatcgaggagctgcggctcagctacttcgcgcagacgatc
aagaccgccttcccggtgtcggacaagcggatcatgaaggcgttggaacagctggagtcg
tga
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