Actinoplanes sp. L3-i22: L3i22_002860
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Entry
L3i22_002860 CDS
T08939
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03030
DNA replication
actl03430
Mismatch repair
actl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3i22_002860 (holB)
03430 Mismatch repair
L3i22_002860 (holB)
03440 Homologous recombination
L3i22_002860 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actl03032
]
L3i22_002860 (holB)
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_002860 (holB)
Enzymes [BR:
actl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
L3i22_002860 (holB)
DNA replication proteins [BR:
actl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
L3i22_002860 (holB)
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
L3i22_002860 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
DNApol3-delta_C
AAA_22
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
BCY05198
LinkDB
All DBs
Position
complement(317635..318819)
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AA seq
394 aa
AA seq
DB search
MFSDLVGQDETVETLRRAARAASRVVAGEQVGSGAMTHAWIFTGPPGSGRSLAARAFAAA
LECERDGAGCGECHGCRTVLGKTHADVRFVAPEGLSIGVGEMRALVLRAATAPSGGRWQV
VVIEDADRLTEAAGNALLKAIEEPPPRTVFLLCTPSTHPDDISVTIRSRCRLVPLRQAPA
DAVAAALMERDGLASETATWAAAAAQGDIVRARLLAADPEARSRRDAVLAVPKRLTGVGA
AFEVAAALVASAKAEAAAGVVDSDAAERSALEQALGAGGTGRGAAGAMRGAAGQIKDLEK
RQKSRATRAQRDALDRSLVDLAGFYRDVLITALRAPVAVVHGDVSPQSEAAARKWTPESA
LRRLEAVLACRESINQNVKPEIAVEAMMLNLWKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
gtgttctccgacctggtcgggcaggacgagacggtcgagacgctgcggcgggccgcgcgg
gcggcttcgcgtgtcgtcgccggggagcaggtcggcagcggggcgatgacccatgcctgg
atcttcaccgggccacccgggtccgggcggtcgctggcggcccgggcgttcgcggcggcg
ctggagtgtgagcgggacggggccggctgcggtgagtgccacggctgccgcacggtgctc
gggaagacccatgccgacgtacggttcgtcgccccggaaggcctctcgatcggcgtcggc
gagatgcgggcgctggtgctgcgcgcggcgaccgcgccgtccggcgggcgctggcaggtc
gtggtgatcgaggacgccgaccggctcaccgaggccgcggggaatgcgctgctcaaggcg
atcgaggagccgccgccgcggacggtcttcctgctctgcacgccgtcgacccacccggac
gacatctcggtgacgatccgctcccggtgccggctcgtgccgctgcggcaggcgccggcg
gacgcggtcgcggcggcgctgatggagcgggacgggctcgcctcggagaccgccacctgg
gcggccgcggcggctcagggcgacatcgtccgggcccggctgctggccgccgatccggag
gcgcggtcccggcgggacgcggtgctcgcggtgccgaagcggctgaccggagtgggcgcc
gcgttcgaggtggcggcggcgctggtggcctcggccaaggcggaggcggcggccggcgtg
gtggattcggacgccgccgagcgttcggcgctggagcaggcgctgggcgcgggtggcacc
gggcgcggggcggccggggcgatgcgcggggcggccgggcagatcaaggatctggagaag
cggcagaagtcgcgggccacccgggcgcagcgggacgcgctcgatcggtcgctggtcgac
ctggccgggttctaccgggacgtgctgatcacggcgttgcgggcgccggtggcggtggtg
cacggggacgtgtcgccgcagtccgaggcggcggcgcggaagtggacgccggaaagtgcg
ctgcgccggctggaggcggtgctggcctgccgcgagtcgatcaatcagaacgtcaagccg
gagatcgccgtcgaggccatgatgctcaacctctggaaaggctga
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