Actinoplanes sp. L3-i22: L3i22_007850
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Entry
L3i22_007850 CDS
T08939
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3i22_007850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_007850 (mfd)
Enzymes [BR:
actl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3i22_007850 (mfd)
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L3i22_007850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCY05697
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All DBs
Position
839592..843212
Genome browser
AA seq
1206 aa
AA seq
DB search
MQLSGLIPAALRDRGLARARDLAAKGFVDSDSMDLTAPVSLRPFVVATVAGPGDIGGAQR
PVLAVTATSREADDLADALGCLIDPDRVAVYPSWETLPHERLSPRSDTVGKRLAVLRRLA
HPGDRQPLQVVVAPVRSLLQPQLKGLGDLEPVELVTGREAELEETARRLSDMAYARVDLV
TKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVQRLWAPPCRE
LLLTPAVRAKALELAAAHPELAEILDKLAEGIPVEGMESLAPALLDGTGSMELLVDCMPA
GTHVLLCDPERIRTRAHDLTRTSNEFLEASWAAAAVGGQAPIDVGAVAFRSLADVRAHAA
TLSQPWWTISPFGLAEADAAATEALPWEDAASVQVAPDTGDAVALAAQAVPLYHGDTAKL
AGDLAGWAAAGWAIALVFEGKGTAQRATELLRDAGLGITPVDSISEPITGGQVLVTCGGL
NHGFVDEASRLAVITGNDISGGRGASTKDMRKLPARRRNTIDPLELKMGDFVVHEQHGIG
RYIELVQRTVNGADREYLVLEYAASKRGQPGDRLYVPTDQLDQLSRYVGGESPTLHKMGG
ADWQKSKARAKKAVKEIAAQLIQLYAARQASKGHSFGPDTPWQRELEDAFPYTETPDQMA
AIIEVKHDMELQVPMDRLICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLAQQHFN
TFTERMSQFPVQIRQLSRFQTPKEAALALEQAAGGTADIVIGTHRLLAKSTKFKNLGLII
VDEEQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVL
TYVGAQDDKQVAASIHRELLRDGQVFYLHNRVESIDRAARRLRELVPEARIAVAHGQMSE
EQLEKVMVGFWEKEYDVLVCTTIVESGIDIPNANTLIVERADLLGLSQLHQIRGRVGRGR
ERAYAYFLYPREKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHI
EGVGFDLYVRMVGEAVSAFKGERPDEEAPEVKIDLPIDAHLPTEYIAVERLRLEMYRKLA
EARDDARLEEVIAEMTDRYGEPTAPVVNLIAVARFRQLARAYGLTDVSMQGKHIRFSPLS
LLDSKQMRLKRYHPDSVYKTANDQVSVPRPATRRVGGEPLRDQALLQWCGQLLKDVLGDA
PVPARV
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgcaactctccggtctgattccggccgccctgcgcgaccgtggcctcgcccgggcccgt
gacctggcggccaaagggttcgtcgactccgactcgatggacctcaccgcgcccgtctcg
ctccgcccgttcgtcgtggccaccgtggccggcccgggtgacatcggcggcgcccagcgc
ccggtgctcgcggtcaccgcgacctcccgcgaggccgacgacctggccgacgcgctcggc
tgcctgatcgacccggaccgggtggccgtctacccgtcctgggagacgctgccgcacgag
cggctctcgccccgctcggacaccgtcggcaagcggctggccgtgctgcgccggctcgcc
caccccggtgaccggcagccgctccaggtggtcgtggcgccggtccggtcgctgctgcag
ccgcagctcaagggcctcggcgacctggagccggtggagctggtgaccggccgggaggcg
gagctggaggagaccgcgcggcggctctccgacatggcgtacgcccgggtcgacctggtc
accaagcgcggcgagttcgccgtgcgcggcggcatcctggacgtgttcccgcccaccgac
gagcacccgtcccgggtcgagttctggggcgacgaggtcgaggagatccgcaccttcgcg
gtcgccgaccagcgcaccatcgagcaggtccagcgactgtgggcgccgccgtgccgggaa
ctgctgctcaccccggcggtgcgggccaaggcgctggaactggcggcggcgcacccggag
ctcgccgagatcctcgacaagctggccgagggcatcccggtcgaggggatggagtcgctg
gccccggccctgctggacgggaccggcagcatggagctgctggtcgactgcatgccggcg
ggcacccatgtgctgctctgcgaccccgagcggatccggacccgggcgcatgacctgacc
cgtacgtcgaatgagtttctcgaggcctcctgggccgcggccgccgtcggcggccaggcg
ccgatcgacgtcggcgccgtcgccttccgcagcctggccgacgtccgcgcgcacgccgcc
acgctgagccagccgtggtggacgatctcgccgttcggcctggccgaggcggacgccgcg
gccaccgaagccctgccgtgggaggacgcggcgagcgtgcaggtcgcgccggacaccggg
gacgcggtcgcgctggccgcccaggcggtcccgctctaccacggtgacaccgccaagctg
gccggcgacctggccggctgggcggccgcgggctgggcgatcgcgctggtcttcgagggc
aaggggaccgcgcagcgggccaccgagctgctccgcgacgcgggcctcgggatcaccccg
gtcgactcgatcagcgagccgatcaccggcgggcaggtcctggtcacctgcggtgggctg
aaccacgggttcgtcgacgaggcgtcccggctcgcggtgatcaccggcaacgacatctcc
ggcggccggggcgcgtccaccaaggacatgcgcaagctgccggcccgccggcgcaacacg
atcgacccgctcgaactgaagatgggcgacttcgtggtgcacgagcagcacggcatcggc
cgctacatcgagctggtgcagcgcacggtcaacggcgccgaccgggagtacctggtcctg
gagtacgccgcgtccaagcggggccagcccggcgaccggctctacgtccccaccgaccag
ctcgaccagctctcccggtacgtcggcggcgagtcgcccacgctgcacaagatgggcggc
gccgactggcagaagagcaaggcccgggcgaagaaggcggtcaaggagatcgccgcgcag
ctgatccagctgtacgccgcccggcaggcttccaagggccactcgttcgggccggacacg
ccctggcagcgcgagctggaggacgcgttcccgtacaccgagacgccggaccagatggcc
gcgatcatcgaggtcaagcacgacatggaactgcaggtcccgatggacaggctgatctgc
ggcgacgtcggctacggcaagaccgagatcgcggtccgcgcggcgttcaaggcggtgcag
gacggccggcaggtagcggtcctggtgccgacgaccctgctcgcccagcagcacttcaac
acgttcaccgagcggatgagccagttcccggtgcagatccggcagctgtcccggttccag
acgccgaaggaggccgcgctcgccctggagcaggccgccgggggcaccgcggacatcgtg
atcggcacgcaccggctgctggccaagtccaccaagttcaagaacctcggcctgatcatc
gtggacgaggagcagcggttcggcgtcgagcacaaggagcagctcaaggcactgcgcgcg
tcggtggacgtgctgaccatgtcggccaccccgatcccgcggaccctggagatggcgatc
accggcatccgggagatgtcgaccatcgcgacgccgccggaggagcgtcacccggtgctg
acgtacgtcggcgcccaggacgacaagcaggtggccgcgtccatccaccgtgagctgctc
cgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgaccgggcggcgcgc
cggctgcgcgagctggtgcccgaggcgcggatcgcggtggcgcacgggcagatgagcgag
gagcagctggagaaggtgatggtcggcttctgggagaaggagtacgacgtcctggtctgc
accacgatcgtcgagtccggcatcgacatcccgaacgccaacaccctgatcgtcgagcgg
gccgacctgctcggcctgtcccagctgcaccagatccgcggccgggtcggccggggccgc
gagcgggcgtacgcgtacttcctctacccccgggagaagccgctcaccgagcacgcccac
gagcggctggccaccatcgcccagcacaccgagctcggcgccggcatgtacgtggcgatg
aaggacctggagatccgcggcgccggcaacctgctcggcggcgagcagtccggccacatc
gagggcgtcggcttcgacctgtacgtgcggatggtcggcgaggcggtcagcgcgttcaag
ggcgagcgccccgacgaggaagcgcccgaggtcaagatcgacctcccgatcgacgcgcac
ctgccgaccgagtacatcgcggtcgagcggctgcggctggagatgtaccgcaagctcgcc
gaggcccgcgacgacgcgcggctggaggaggtcatcgccgagatgaccgaccggtacggc
gagccgaccgccccggtggtcaacctgatcgcggtcgcccggttccgtcagctggcccgg
gcgtacggcctgaccgacgtctcgatgcagggcaagcacatccgcttctcgccgctgagc
ctgctggactcgaagcagatgcggctcaagcgctatcacccggactcggtctacaagacg
gcgaacgaccaggtcagcgtcccgcgcccggcgacccggcgggtgggcggcgagccgctg
cgggatcaggcgctgctgcagtggtgcggccagctgctgaaggacgtcctcggcgacgcg
ccggtcccggcccgggtgtga
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integrated database retrieval system
