Actinoplanes sp. L3-i22: L3i22_106290
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Entry
L3i22_106290 CDS
T08939
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L3i22_106290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_106290
Enzymes [BR:
actl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
L3i22_106290
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
L3i22_106290
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L3i22_106290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
BCY15541
LinkDB
All DBs
Position
11891552..11892415
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AA seq
287 aa
AA seq
DB search
MPELPEVEALAAYLRERAVGHTVQRFEVSSFSALKTYDPAPSALTGLPITSAGRHGKFLD
IGIGPEVHLVVHLARAGWLHYRDAFKSPAPLKPGSGPIALRLRLDDGSGFDLTEAGTQKS
LAAYLVRDPRTEVPGVSRLGPDALEVSRDEFAALMKSRNGQVKGVLVDQEVIAGIGNAYS
DEILHVAKMSPFALTGKLTDEQLTTLYEAMREVETDAVQRSVGQRAAELKGEKRAGMRVH
ARTGLPCPVCGDTVREVSFADKSLQYCATCQTGGKPLADRRLSKLVR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactccccgaggtcgaggcgctcgctgcgtacctgcgggagcgcgcggtcggc
cacaccgtgcagcgcttcgaggtctcctcgttcagcgcgttgaagacgtacgatccggcg
ccctcggccctgaccggactgccgatcacctcggccggccggcacggcaagttcctggac
atcggcatcggccccgaggtgcacctggtcgtgcacctggcccgggccggctggctgcac
taccgggacgcgttcaagtcgccggccccgctcaagccgggcagcggcccgatcgcgctc
cggctccgcctcgacgacggctccggcttcgacctgaccgaggccggcacgcagaagtcg
ctcgccgcctacctggtgcgcgacccgcgtaccgaggtccccggcgtgtcccggctcggc
ccggacgcgctggaggtctcccgcgacgagttcgccgccctgatgaaatcccggaacggc
caggtcaagggcgtgctcgtcgaccaggaggtgatcgccgggatcggcaacgcctactcc
gacgagatcctgcatgtggcgaagatgtcacctttcgccctcaccgggaagctcaccgac
gagcagctcaccacgttgtacgaggcgatgcgcgaagtggagaccgacgcggtgcagcgc
tccgtcggacagcgagccgccgaactgaagggcgagaagcgggccggaatgcgggtgcac
gcccggaccggtctgccgtgcccggtttgcggggacaccgtgcgtgaggtctcgttcgcc
gacaagagcctgcaatattgcgctacctgccagaccggtgggaaaccgctcgccgatcgc
cgcctgtccaagttggtccggtga
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