Actinomyces sp. zg-332: HCQ94_00540
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Entry
HCQ94_00540 CDS
T08424
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
actm
Actinomyces sp. zg-332
Pathway
actm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
actm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCQ94_00540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actm03021
]
HCQ94_00540
03400 DNA repair and recombination proteins [BR:
actm03400
]
HCQ94_00540
Enzymes [BR:
actm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCQ94_00540
Transcription machinery [BR:
actm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCQ94_00540
DNA repair and recombination proteins [BR:
actm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCQ94_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PriC
Motif
Other DBs
NCBI-ProteinID:
QPK94241
LinkDB
All DBs
Position
143094..146999
Genome browser
AA seq
1301 aa
AA seq
DB search
MLDANIFDKLHIGLATASDVRDWSHGEVKKPETINYRTLKPEKEGLFCERIFGPTRDWEC
NCGKYKRVRYKGIVCERCGVEVTRSKVRRERMAHIELAAPVTHIWYFKGVPSRLGYLLNL
APKDLEKVIYFAAYMITEVDTEGRHEDMASLQNEYDLDCKEITAFMEGQINNRLEALEKE
LATLEAENAKEELKSKVRKAGEKEVNFMRKKLESDLALLEKVWERFKNLQVGDLEGDEIV
FREMVNRYGIYFKGSMGAEAIQKRLQNFDLEAEAELLHEIIANGTGQRKARALKRLKVVN
AFLTTGNSPEGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLIEL
NAPDIIINNEKRMLQESVDALFDNGRRGRPVTGPGNRALKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDHNFAQNIKAAKRKVERGT
PEVWDVLDEVIREHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILKPSDGRPVTMPAQDMITGLYHLTSEPNPNIEVAV
DSAGNPIIPTFTSVAEAIMAFDAGWLDLNATVDIRMDDFVPYPEWDGPRDYFEEEPVVVR
TSLGRALFNGLLPEDYPYVNYVVDKKRLGSLVNDLAERYPKVVVAASLDALKEAGFHWAT
WSGMTIAFPDIVGPSDKPEILAKYEDLAAKIQSDYDMGLIGEDDRYRELVDIWQECTKKV
AEAMLSSFPERNTIFRMVNSGSRGNWDQIRQIAGMRGLVSDPKQKLIERPIKSNYAEGLS
VLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTRRGLSITIGEKD
AAGNVVILDTVETTAFARTLAKDVLNAEGEVLAQAGSDIGDVLINKLIAEGVTQIPVRSV
LTCESAAGACATCYGRSLATGKRVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAASAAD
ITQGLPRVQELFEARTPKGEAIITEAAGRVKIDDSEAIRRIIIVRDDAEEDLVIEVSRRQ
EILVADGDQVSVGQQLTAGPVDPKKVLRVLGQNATQRMLVNEVQSVYRSQGVDIHSKHIE
VIVRQMLRRVTVLEPGGTNLLPGELIEQSRFRAENARIQSEGGTPASGRPELMGITKASL
ATESWLSAASFQETTKVLTEAAMTRRSDPLLGLKENVILGKLIPAGTGLQRYSTVVVQPT
DEAINDATYNQFDFVSQPDMDYLSNLNLDVDFADTFGVDFD
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgcgaatatcttcgataagttgcacattggtcttgccaccgcaagcgatgta
cgtgactggtctcatggtgaagtaaagaaaccagagacaatcaattaccgtacattgaag
ccagaaaaggaaggtcttttctgtgaacgtattttcggtccaactcgtgactgggaatgt
aactgtggtaaatacaagcgtgtgcgttacaaaggtattgtttgtgaacgttgtggcgtt
gaagttacacgttcaaaagttcgtcgtgaacgcatggctcacattgagctagcagcacca
gtaacacatatttggtactttaaaggcgtaccatcacgtctaggttacttgttgaaccta
gcaccaaaagacttggaaaaagtcatttactttgctgcttacatgattaccgaagttgat
actgagggtcgccatgaagatatggcttctttgcagaacgaatatgatttagattgcaaa
gaaataacagctttcatggaaggtcaaatcaacaatcgcctagaagctttggaaaaagaa
ctagctactttggaagctgaaaatgctaaggaagagctaaagtctaaagtacgcaaagct
ggcgaaaaagaagttaactttatgcgtaaaaagctagagtcagatttggctttgcttgag
aaagtatgggaacgtttcaagaatctacaggtcggtgaccttgaaggtgacgaaatcgta
ttccgtgaaatggttaaccgttacggtatttacttcaaaggctcaatgggtgctgaagct
attcaaaaacgtttgcagaactttgatttagaagctgaagcagaacttttgcatgaaatt
attgctaatggcacaggtcagcgtaaagctcgtgcattgaagcgcctaaaggtggtaaat
gcattcctaaccacaggtaactcacctgaaggtatggtcttggactgcattccagttatt
ccgccagatttgcgtccaatggttcagctagacggtggacgtttcgcaacaagtgacttg
aacgatttatatcgtcgtgttatcaaccgaaacaaccgtttgaagaaactaatcgaacta
aatgcaccagacatcattatcaacaatgagaagcgtatgctacaagaatcagttgatgct
ttgtttgacaacggtcgccgtggtcgcccagttactggtccgggtaaccgtgcactcaag
tctatttctgatatgttaaaaggtaagcaaggtcgtttccgtcaaaatttgctaggtaag
cgtgttgactattctggtcgttcagttatcgttgttggtccacagctcaagctacaccag
tgtggtttgccaaagcagatggctcttgaattgttcaagccatttgttatgaagagacta
gttgaccataacttcgcacagaacattaaagctgctaagcgtaaggtagaacgtggaact
cctgaagtttgggacgtattggacgaagtaattcgtgagcaccctgttttgctaaaccgt
gctcctaccttgcaccgtctgggtattcaggcattcgaaccacaactggttgaaggtaaa
gctattcagttgcacccactagtttgtgctgctttcaatgctgacttcgacggtgaccag
atggctgttcacttgccacttagtgctgaagcacaagctgaagctcgtattttgatgctt
tcagctaacaatattttgaaaccaagcgacggtcgcccagttacaatgcctgctcaggac
atgattactggtttgtaccacttgacttcagaaccaaatccaaatattgaagtagcagtt
gacagtgctggtaacccaataattccaactttcacatcagttgctgaagcaattatggct
tttgatgctggttggttagatttgaatgctaccgtagatattcgtatggacgactttgta
ccttatccagaatgggatggtccaagggattacttcgaagaggaacctgttgttgtacgc
acttcactaggtcgtgcattgttcaacggtttactaccagaagattacccatatgtaaac
tacgttgttgacaagaagcgtttaggtagcttggtaaacgacttagctgaacgttatcca
aaggtagttgttgctgcatctttggacgctttgaaagaagctggtttccactgggcaact
tggtcaggtatgacaattgctttccctgatatcgttggtccatcagataagccagaaatt
ctagctaagtacgaagatctagctgctaagattcagtcagactatgacatgggtctaatc
ggtgaagatgaccgttaccgtgaacttgttgatatttggcaggaatgtacaaagaaagtt
gctgaagcaatgctttcatcattcccagaacgcaacaccattttccgtatggtcaactcc
ggttctcgtggtaactgggatcagattcgccagattgctggtatgcgtggtttggtgtca
gaccctaagcaaaagctaattgaacgtccaattaagtctaactatgctgaaggtttgtca
gttcttgagtacttcatcgctacacacggtgctcgtaaaggtttggctgataccgctttg
cgtactgctgactcaggttacttgactcgtcgtctagttgatgtttcacaagatgttatt
gtccgtgaagaagactgtggcactcgtcgtggtctgtcaatcactatcggtgaaaaggac
gcagcaggtaacgttgttatcttggatactgttgaaactactgcttttgcgcgtactttg
gctaaagatgttctaaatgctgaaggtgaagtacttgctcaagctggtagcgatattggt
gatgtattgattaacaagttgattgctgaaggtgtaactcaaattccagttcgctcagtt
ttgacttgtgaatcagcagccggcgcttgtgctacttgctatggtcgaagcctagcaaca
ggtaaacgagttgacattggtgaagcagtgggtattattgctgcacagtcaattggtgaa
cctggtacacagctaacaatgcgtactttccacactggtggtgctgcatctgctgccgac
attactcaaggtttgcctcgtgttcaagagttgtttgaagctcgtacacctaagggtgaa
gctatcatcactgaggctgctggtcgtgtaaagattgatgattctgaagctattcgtcgt
attattattgttcgcgatgatgctgaagaagatttggtcattgaagtttcacgtcgtcaa
gaaatcctagttgctgatggagatcaggtatctgttggacagcaattgactgctggtcca
gttgatcctaagaaagttttgcgcgtcttgggtcaaaacgctactcagcgtatgctagtg
aatgaagtacagagcgtataccgttcacagggtgtagatatccactcaaagcacatcgaa
gttattgttcgtcagatgctacgtcgcgttactgttctagagccagggggcacaaacttg
ttaccaggtgagttgattgagcagtctcgtttccgtgcagaaaatgctcgtattcagagc
gaaggtggcactcctgcatctggtcgtccagaactaatgggtatcactaaggcatcactg
gcaactgagtcttggctatctgctgcttccttccaggaaacaactaaggtcttgactgag
gctgctatgacacgtcgtagtgatccattgctaggtctaaaagaaaatgtcattttgggt
aagcttattccagctggtactggtttgcaacgctacagcactgtagtagttcagccaact
gatgaagcaatcaatgatgctacttataatcagtttgattttgtttcacagccagatatg
gattacttgtctaacttgaatttagacgtcgacttcgctgatactttcggtgtagatttt
gactaa
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