Actinomyces sp. zg-332: HCQ94_01730
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Entry
HCQ94_01730 CDS
T08424
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
actm
Actinomyces sp. zg-332
Pathway
actm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCQ94_01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actm03019
]
HCQ94_01730
03009 Ribosome biogenesis [BR:
actm03009
]
HCQ94_01730
Enzymes [BR:
actm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HCQ94_01730
Messenger RNA biogenesis [BR:
actm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCQ94_01730
Ribosome biogenesis [BR:
actm03009
]
Prokaryotic type
rRNA processing factors
HCQ94_01730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HHH_7
Staphostatin_A
DUF1373
Motif
Other DBs
NCBI-ProteinID:
QPK94722
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All DBs
Position
455068..457260
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AA seq
730 aa
AA seq
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MIKITYDFDVDTPQYHEYIERLKKFHCNLNPDLPFSSLENLKDNPISLHDNVNLDIVFEA
VDLSQIQPIEHPQRDLEEGKAENKDEKSISRRVERLRTRRKSSVLEIEEGDGTRRRRLRQ
RRRDDDEAKGVVALQGSTRLEAKRRRRHDNNLTTLRQTKITESEFLARRECVDRKMVVRE
KDGLNQIAVLEDGLLVEHYVARHSQTTSVGNVYLGRVQNVLPSMEAAFVDIGKERNAVLY
AGEVNWDELGLEGNVRRIENALKPGDIILVQVTKDPIGHKGARLTSQVTLAGRHIVLVPS
GAMTGISKKLPEEERRRLKKILRSIVPDEYGVIVRTAAEGASTEQIEDDVKRLVKIWEGI
EHKQKTNNSPMVVHTEPELALRVIRDIFNEDFKELVVSGNNAWDNISKYVNELSPDLADR
LVKWTDTNDVFIANRVDEQLAKGMDRKVWLPSGGYLIIDRTEAMTVIDVNTGKYIGAGGT
LEETITKNNLESAEEIVRQLRLRDIGGIIVIDFVDMVLESNRTLVLRRLIECLGRDRTRH
QVTEVTSLGLVQMTRKRVGQGLVEAFSSKCECCDGRGFLVHSQPVDESAISKKERKSRKN
NSDIDNEKTLEVSEEDKDASNEYGVDASNKDVKSIGEKEKRNESSDYNVSNSQKGRRVSK
NHKGESQNKHKGSSVALVERSHESEFSEKGDEDQVYGAHSEKPKRKKRKRVVSQGTFAPS
DDSNSSIIIL
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaaatcacttacgactttgatgtagacacacctcaataccatgagtatatagag
cgattaaagaaattccattgtaacttaaatccagatttacctttttcttctctagagaac
cttaaagataatccgatatctttacatgacaacgtcaacttagatattgtttttgaagct
gtagatttaagtcaaatacaacctattgagcaccctcagagggatctcgaagaaggtaaa
gctgaaaacaaggatgaaaaatctatttcaagacgcgtagaaagattacgtacacgccgt
aaatctagtgttttagagattgaagagggcgatggcactcgtagacgccgtctgcgtcag
cgtagacgagatgacgacgaagctaagggtgtagttgctttacaaggatctactcgctta
gaagctaaacgccgtcgtcgccatgacaataacttgacaactttgcgtcaaacaaaaatt
acagaatcagagtttttggctcgtcgtgagtgtgtcgaccgcaagatggtggtacgtgaa
aaagatggtttgaaccagattgctgttttagaagatggcttattggttgaacattatgtt
gcacgtcattcacaaacgacttctgtaggaaatgtttacttaggtagagttcaaaatgtt
ttgccttcaatggaggcagcattcgttgatattggcaaagaacgtaacgctgttttatat
gctggtgaagttaactgggatgaacttggtcttgaaggaaatgtcagacgtattgaaaat
gctctaaaaccaggtgatattattcttgttcaagtaactaaggatcctattgggcataag
ggtgctagattaacatctcaagttactttggctggtcgtcacattgttttagttccttct
ggagctatgacgggtatatctaagaaattgcctgaagaagaacgtcgtcgtttgaagaag
attttgcgttcaattgtgcctgacgagtatggtgttattgttagaacagctgctgaaggc
gcaagtactgaacaaattgaagatgatgtaaagcgtttagtaaagatttgggaaggcata
gagcataagcaaaagactaacaactctcctatggttgtacatactgaacctgagttggct
ttgcgtgttattcgtgacatttttaacgaagatttcaaagagctagttgtttcaggcaat
aacgcttgggacaatatttctaagtatgtaaatgagttgtctccagatttggctgaccgg
ttagtcaagtggacggatacaaatgacgtatttattgctaatcgtgtagatgaacagtta
gctaaaggtatggatcgtaaagtatggctaccgtctggtggttatttgattattgatcgt
acggaagctatgactgttatagatgttaacactggtaaatacattggtgctggtggaaca
ctagaagaaactattacgaaaaataacttagaatcagcagaagagattgtacgtcagtta
cgtttacgtgatattggtggaattattgttattgacttcgtagatatggttttagagtct
aaccgtaccttggtattacgtcgtctaatcgagtgtttaggaagggataggaccagacat
caggttactgaggttacttccttgggactagttcagatgactcgaaaacgtgttggtcaa
ggcctcgtggaggcattttcttcaaagtgtgagtgttgtgatggtcgaggctttttagtt
cattcacaacctgtagatgaatctgctattagtaagaaagaacgtaagagtcgaaaaaat
aatagtgatatagataatgaaaagactttagaagtgtctgaagaagataaagatgcttct
aatgagtatggtgttgacgcatcaaataaagatgtgaaaagcattggcgaaaaagaaaaa
agaaatgaatctagtgattacaatgtatctaactctcaaaaaggtcgtagagttagtaag
aatcacaaaggtgaaagccaaaataagcacaaaggtagtagtgttgcccttgttgaaaga
agtcatgaaagtgaattttcagaaaagggtgatgaggaccaagtgtatggagctcactca
gaaaaacctaagcgtaagaagcgtaaaagggtagtttctcaaggaactttcgccccatca
gatgattctaactcttcaataattattttataa
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