Actinomyces sp. zg-332: HCQ94_03400
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Entry
HCQ94_03400 CDS
T08424
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
actm
Actinomyces sp. zg-332
Pathway
actm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCQ94_03400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actm03019
]
HCQ94_03400
03009 Ribosome biogenesis [BR:
actm03009
]
HCQ94_03400
Enzymes [BR:
actm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCQ94_03400
Messenger RNA biogenesis [BR:
actm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCQ94_03400
Ribosome biogenesis [BR:
actm03009
]
Prokaryotic type
rRNA helicases
HCQ94_03400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPK93653
LinkDB
All DBs
Position
835758..837647
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AA seq
629 aa
AA seq
DB search
MNEYTSIEDTNKDMNEITFDSLGLSDQILKSIEKVGYVTPTPIQVQTIPLLLEGKDVVGI
AQTGTGKTAAFALPILEKINPNAKNVQALILAPTRELAMQSANAMDSFLGPKSKVKVVAV
YGGSSYTPQIEALKSGAQIVVGTPGRIMDLMEKKALDLTNVSFLVLDEADEMLRMGFAED
VENIVTDIPNTKQTALFSATMPEDIRKIANNHLNNPTEVSITKQSTTTKNIHQTYAVVPF
KHKVGALSRVLSVKNYGGAIVFVRTRATAEEVAIELGARGIMAATISGDVPQRERERLVE
RIKNGSLNILVATDVAARGIDIERVGLVVNFDVPRENEAYVHRIGRTGRAGRKGEALTFL
TPKESYKLRQIEKLTGAKLEEVAIPTPKDVSEHKAKVQMENISQRVTKPRLELYKEIFTS
FCQSNDISPVDAAAAMLALTVGDEGPSLREEKNRIRYEESVDENGEFISAVFEEGRDKSS
RKSSRGTGGGYSSRERSRAVQEGFTRYRIEVGRKDNVSPGEIVGAMAGESSLKGSQIGRI
DILPTFTLVDVNQEISGKDMRRLQNTQVRNRSLLISLDEGPKTRSSNRGGRGRISSPSKH
YDNIRVKRKGKDFIPKGASKKVKKNKKKR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatatacaagtatcgaagatactaataaagatatgaatgaaattacgtttgat
agtttaggtttatcagatcaaattctaaaatcaattgaaaaagtaggatatgttactcct
acccctattcaggtgcaaacaatcccgttattgttagagggaaaagacgttgtaggtata
gctcaaacaggtactggtaaaactgctgctttcgcattgcctatcctagagaaaatcaac
cctaatgctaaaaatgtacaagctcttattctagctcctacacgtgaattagcaatgcaa
agcgcaaatgcaatggacagctttttaggccctaaatcaaaggtaaaagttgttgctgtt
tacggaggatcttcttatacaccacagatagaagcacttaaatctggtgcacaaatagtg
gtaggtacccctggtagaatcatggaccttatggaaaagaaggcattagatttaactaat
gtttctttcttagtcctagatgaagctgatgaaatgttacgtatgggctttgctgaggac
gttgaaaatattgttactgatattcctaatactaaacaaacagctttattctcagcaact
atgcctgaagatataagaaaaattgctaataatcatttgaataatccaacagaagtaagc
attactaagcaatctactacgacaaaaaatattcaccagacttatgctgtggttcctttc
aagcataaagtaggtgctttgtcacgagtattgtcagtaaaaaattatggtggtgctata
gttttcgttaggacaagagcaacagctgaagaagtagcaattgaacttggcgctagagga
attatggctgcaactataagtggcgatgttcctcaaagagagcgtgaaagacttgttgaa
cgcataaaaaatggtagcttaaatattctagttgcaacagatgtggctgctcgcggtata
gatattgagcgtgttggactggtcgtaaactttgatgtacctcgtgaaaatgaagcttat
gtacatcgtattggacgtactggtcgtgctggacgtaaaggtgaagctttaactttccta
actccaaaagaaagctacaagctacgtcagattgaaaagcttacaggtgcaaaactagaa
gaagtagcgattcctactccaaaagatgtatcagaacataaagctaaagttcaaatggaa
aatatttcacaacgagtaactaaacctcgtttagaactatataaagaaatatttacatct
ttctgccaaagtaacgatatttcaccagttgatgctgctgcagcaatgctggcattaact
gtaggtgacgaaggaccttcacttagggaagaaaaaaacagaatacgttatgaagagtca
gttgatgaaaatggagaattcatcagtgccgtatttgaagaaggacgagataaatctagc
cgtaaatcttcacgaggtacaggtggaggttattcttctagagaacgaagccgtgcagtt
caagaaggctttactcgttaccgtattgaagtaggtcgtaaagacaatgtctcccctggt
gaaattgttggtgctatggctggagaatcgtcacttaaaggaagccaaattggccgtata
gatatattgcctacttttactttagttgatgtaaatcaagaaatatctggtaaagatatg
cgtcgcctacaaaacactcaagttcggaatagatctttactaatttctttagatgaaggt
ccaaaaactaggagttccaatagaggcggacgaggtagaatttcttctccaagtaagcat
tacgataatattcgtgtgaaaagaaaaggaaaagatttcattcctaaaggggcatctaaa
aaggtaaagaaaaacaagaaaaagaggtaa
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