Actinomyces sp. zg-332: HCQ94_05890
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Entry
HCQ94_05890 CDS
T08424
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
actm
Actinomyces sp. zg-332
Brite
KEGG Orthology (KO) [BR:
actm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actm03032
]
HCQ94_05890 (topA)
03400 DNA repair and recombination proteins [BR:
actm03400
]
HCQ94_05890 (topA)
Enzymes [BR:
actm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCQ94_05890 (topA)
DNA replication proteins [BR:
actm03032
]
Prokaryotic type
DNA Topoisomerases
HCQ94_05890 (topA)
DNA repair and recombination proteins [BR:
actm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCQ94_05890 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QPK94090
LinkDB
All DBs
Position
complement(1470600..1473266)
Genome browser
AA seq
888 aa
AA seq
DB search
MSETKLVIVESPAKARTISSYLGAEYRVEASIGHIRDLPQPSSLPDEMKKGPYGKFAVNI
ETFEPYYVVDSDKKKKVAELKKALKEAKELYLATDEDREGEAIAWHLLEVLKPKIPVYRM
VFHEITKEAIAYALENTRQINENLVDAQETRRILDRLVGYEVSPLLWRKIKPGMSAGRVQ
SVATRLIVERERERMVFKPMNYSGIEISFENNNIGFKTKLVKVNEQKIATGRDFTDQGTL
TSAAEKNNVLVLNQEQAEDLAEQLKNKPTKVEDIETKPYTRHPAAPFTTSTLQQEASRKL
HMNSREAMRVAQSLYENGYITYMRTDSTALSEQAVKAARIQAKELYGSENVSKTPRVYTK
KTKGAQEAHEAIRPAGEYFRTPQELEGVLEKQQYALYDLIWKRTIASQMVDVKGTTNTLV
LSTDVADKQCISTVSGTVIHQKGFLNAYEEGKDAARYGSDNDLSELPALNINDVLEILDV
NVLTHTTTPAPRYTEASLVKTLEEHGIGRPSTYASIISVIIDRGYVFKKAQALVPSWLAF
SVVKLLEENLAEMVDYDFTAQMENDLDKIAQGEQIGTSWLKDFYYGDGSKHGLHTSVENL
GDIDAREINTVKISSDIELRVGRFGPYIQEVNNEEKRASVPENIAPDELTEEKAKELFEM
SAQDGKTLGVDPETNLEIIAKNGRFGAYVTEVLPEESKEKPRIASLFKSMTLDTITLEQA
VNLLKLPREIGVRDSDKEVITAQNGRFGPYIKCGSDTRTLETEEQIFTLTLEEALTLLEQ
PKVSKRRTSVSVLKELGTDPASEKPVKIKDGRFGPYITDGTTNVTVPKTETIEGITPERA
YELLADKRAKGTVKKKATRATKAKSTKTAKTAKTTKTAKTSKKTTAKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgaaacaaaattggtcatagtagagtctcctgctaaagctcgcacaatatcgtca
tacttaggtgcagagtacagagtcgaagcttctatcggacatatacgagacttaccacag
ccatcttcattacctgatgagatgaaaaaaggtccatacggaaaatttgctgttaacatt
gaaacttttgaaccctattatgttgtagattcggataagaaaaagaaagttgcagagctt
aaaaaagctttgaaagaagccaaagaactatatctggcaactgatgaggaccgtgaaggt
gaagcaattgcttggcacttattagaagtgctgaaacctaaaattcctgtttaccgaatg
gtatttcacgaaattacaaaagaagctatagcttatgctttagaaaatactcgacaaatt
aatgagaacttagttgatgctcaagaaacgcgtagaattttagatcgtctagtagggtat
gaagtttcccctctgctttggcgaaaaattaaaccaggaatgtcagcaggccgtgtgcaa
tcagttgcaacacgtttaattgttgaacgtgaacgtgaacgtatggttttcaaaccaatg
aattattccggtattgagataagttttgaaaataacaacattggttttaaaactaaacta
gtaaaagtaaatgaacagaagatagctacaggtcgtgattttaccgatcaaggtactttg
actagtgctgctgagaaaaataatgttctagtattaaatcaagagcaagctgaagattta
gctgaacagctaaaaaataagcctactaaagtcgaagatatagagactaaaccatacact
agacacccagctgctccatttaccacatcgactttacaacaagaagcttcacgtaaactg
catatgaactcacgagaagcaatgcgagtagcgcagtcgctatacgaaaatggttacatt
acctatatgcgtactgattcaacagctttatcggagcaggctgttaaggctgcaagaata
caagcaaaagagttgtatggatctgaaaacgtttcaaaaactccaagagtatatactaaa
aaaactaaaggagctcaagaggctcacgaggctatacgtccagctggtgaatatttcaga
actccacaagaactagaaggtgtactagagaaacaacagtatgccctatatgatttaatt
tggaagcgaacaatagcttcacaaatggtagatgtaaaaggtactactaataccttggta
ttatcgactgatgttgctgataaacaatgtatatctacagtttcaggtactgttatacac
caaaaaggcttcttgaatgcttatgaagaaggcaaagatgcagcaagatatggatctgac
aatgatctaagtgagttgcctgcattaaatatcaatgatgtcttggagatacttgatgta
aacgtattaacgcacactacaactccagcaccaagatacacagaagcttcactagttaaa
actttagaagaacatggaattggtcgtccatcaacatatgcttcaatcatttccgtaatc
atagacagaggttacgttttcaaaaaagctcaggctttagttcctagctggttggctttt
tcagtagttaaacttcttgaagagaatcttgccgaaatggtcgattatgatttcactgca
caaatggaaaatgatttagataaaatcgcgcaaggtgaacaaattggaacatcatggctg
aaagacttctattatggcgatggtagtaagcatggtttacataccagtgttgaaaatcta
ggtgacattgacgctagagaaataaatactgtaaaaataagtagtgatatagaattgcgt
gtcggtcgtttcggtccatatattcaagaagtaaacaacgaagaaaaacgagcatctgta
cctgaaaatattgctccagatgaacttaccgaagaaaaagctaaagaactatttgaaatg
tcagcgcaagatggcaaaacattaggtgttgacccagaaactaatctggaaattatagct
aaaaatggtcgtttcggtgcttacgttacggaagtattgccagaagaaagtaaagaaaaa
ccacgcatagcatcattattcaagagcatgactttagatactattactttagaacaagct
gtgaatttgctaaaactaccaagagaaataggggtaagggattctgataaggaagtaatt
actgctcaaaatggtcgttttggtccgtacattaaatgtggatctgatactcgtactcta
gaaactgaagagcaaatatttactcttactctagaggaagctttaactttgctagaacaa
cctaaggtttcaaagagaagaacaagtgtctcagtattaaaagaattaggaacagatcct
gctagtgaaaaacctgttaaaatcaaagatggtcgttttggcccatacattaccgatgga
actacaaatgttactgtgcctaagacagaaacaatagaaggtataactccagaacgcgct
tatgagttgttagctgataaaagagctaaagggacagtgaagaaaaaagcaactagggca
actaaagctaagtcgactaagacagcaaaaacagccaagacaacgaaaacggcgaaaaca
tctaagaaaacaacagctaaaaaataa
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