Actinoplanes sp. N902-109: L083_6102
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Entry
L083_6102 CDS
T02655
Name
(GenBank) ATP-dependent DNA helicase, recq family protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
actn
Actinoplanes sp. N902-109
Pathway
actn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L083_6102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actn03019
]
L083_6102
03400 DNA repair and recombination proteins [BR:
actn03400
]
L083_6102
Enzymes [BR:
actn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L083_6102
Messenger RNA biogenesis [BR:
actn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L083_6102
DNA repair and recombination proteins [BR:
actn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L083_6102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF3553
ResIII
PcrA_UvrD_tudor
Cas3-like_C_2
HEM4
QueC
Motif
Other DBs
NCBI-ProteinID:
AGL19612
UniProt:
R4LJQ4
LinkDB
All DBs
Position
6985061..6986713
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AA seq
550 aa
AA seq
DB search
MKLNVPVYGPRLRKIARKHFGWPSLRPGQFKPMRAVLRRRDALVVLPTGAGKSAIYQIPA
VLLPGPTVVISPLLALQQDQIVALNEYADPKLRAVRVSSAETPAQQREAIQEIRDGRAEF
LFITPEQLSDPERLAEVRALRPGLVAVDEAHCISVWGHDFRPDFLQLGHLIKAIGRPPVV
ALTATASPPVRDDIIERLQLRKPEIHVSGLDRSNLFLEVAQCPDENYRWRRLTTLLDETP
RPGIIYVATRRAAEELAEKLTTAGYPAEFYHGGMAAGAREQRHEDFTNDKVDIMVATSAF
GMGIDKPNIRWVAHMALPDSPDSYFQEIGRMGRDGEPGRALLLWRAEDEGIQRFFSGGSP
AVEELRELAAALRGGASTKTELKDKTGLGPRKLGQLLALLEQVGAATAHGNHWTVPRYAP
LPAKAADKAGAEHERQQVVQRSRTDMMRGFAETRACRTQTLLAYFGEDTGRPCGHCDNCA
DGTAEEVEEATGDEPFAVHSSVEHPEWGTGMVMSYEEDKMTVLFESQGYKTLSVPVVLEH
AILKQVSTSA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacgttccggtctacgggccgcgcctgcgcaagatcgcgcgtaagcacttc
ggctggccctcgctgcgccccggtcagttcaagcccatgcgggcggtgctgcgccggcgc
gacgccctggtcgtgctgccgaccggcgccggcaagtcggcgatctaccagatcccggcg
gtcctgctgcccgggccgacagtggtgatctcaccgctgctggccctgcagcaggaccag
atcgtcgcgctcaacgagtacgccgaccccaagctgcgcgcggtgcgggtcagctccgcc
gagacaccggcccagcagcgcgaggccatccaggagatccgcgacggccgggccgagttc
ctgttcatcaccccggaacagctcagcgaccccgagcggctggccgaggtgcgcgcgctg
cggcccgggctggtcgccgtcgacgaggcgcactgcatctcggtgtggggccacgacttc
cgccccgacttcctccagctgggccatctgatcaaggcgatcggccggcccccggtggtg
gcgctgaccgcgaccgcgtcgccgccggtgcgcgacgacatcatcgagcggctgcagctg
cgcaaacccgagatccacgtctccgggctggaccgcagcaacctgttcctcgaggtcgcc
cagtgcccggacgagaactaccgctggcgccggctgaccacgctgctcgacgagacgccg
cggcccggcatcatctatgtcgccacccggcgggccgccgaggaactcgccgagaagctc
accacggcgggctacccggccgagttctaccacggcggtatggcggccggtgcccgcgag
cagcgccacgaggacttcaccaacgacaaggtcgacatcatggtggcgacctcggcgttc
ggcatgggcatcgacaagcccaacatccgctgggtcgcgcacatggccctgcccgactcc
ccggacagctacttccaggagatcggccggatgggccgggacggtgaaccgggccgcgcg
ctgctgctctggcgcgccgaggacgagggcatccagcgcttcttcagcggtggcagcccc
gccgtcgaggagctgcgcgagctggccgccgcgctgcgcggcggcgcgagcaccaagacc
gagctcaaggacaagaccgggctcggcccgcgcaaactcggccagctgctcgccctgctc
gaacaggtcggcgcggccaccgcccacggcaaccactggacggtgccgcggtacgccccg
ctgccggccaaggccgccgacaaggccggtgccgagcacgaacgccagcaggtcgtgcag
cgctcccgcaccgacatgatgcgggggttcgccgagacccgcgcctgccgcacccagacc
ctgctcgcctacttcggcgaggacaccggccggccctgcggccactgcgacaactgcgcc
gacggcaccgccgaggaggtcgaggaagccaccggcgacgagccgttcgccgtgcacagc
tcggtcgagcacccggagtggggcaccggcatggtgatgagctacgaggaggacaagatg
accgtcctgttcgagtcccagggctacaagacgttgtccgtaccggtagtcctggaacac
gcgatcctcaaacaggtcagtacgtcagcttga
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