KEGG   Actinomyces sp. oral taxon 897: C3V41_00810
Entry
C3V41_00810       CDS       T05399                                 
Name
(GenBank) integration host factor
  KO
K03530  DNA-binding protein HU-beta
Organism
acto  Actinomyces sp. oral taxon 897
Brite
KEGG Orthology (KO) [BR:acto00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acto03032]
    C3V41_00810
   03036 Chromosome and associated proteins [BR:acto03036]
    C3V41_00810
   03400 DNA repair and recombination proteins [BR:acto03400]
    C3V41_00810
DNA replication proteins [BR:acto03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    C3V41_00810
Chromosome and associated proteins [BR:acto03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    C3V41_00810
DNA repair and recombination proteins [BR:acto03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      C3V41_00810
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-DNA_bdg DSBA DUF2267 DUF7342
Other DBs
NCBI-ProteinID: AVM60865
LinkDB
Position
199040..199321
AA seq 93 aa
MSVNRTELIAAIAEKAGLTKTDADTFLGAFQDVLVENVAKGEAVKITGLMGVERVERAAR
TGRNPRTGEEIQIPAGYGVKLTVGSALKKAVQA
NT seq 282 nt   +upstreamnt  +downstreamnt
atgtccgtcaaccgcactgagctcattgccgccatcgctgagaaggctggtctgaccaag
accgacgccgacaccttcctcggcgccttccaggacgtcctggtggagaacgtcgccaag
ggtgaggccgtcaagatcaccggtctcatgggggtcgagcgcgtcgagcgcgccgcccgc
accggtcgcaacccgcgcacgggcgaggagatccagatcccggccggctacggcgtcaag
ctcactgtcggctccgccctcaagaaggccgtccaggcctga

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