Actinomyces sp. oral taxon 897: C3V41_03705
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Entry
C3V41_03705 CDS
T05399
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acto
Actinomyces sp. oral taxon 897
Pathway
acto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V41_03705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acto03019
]
C3V41_03705
03009 Ribosome biogenesis [BR:
acto03009
]
C3V41_03705
Enzymes [BR:
acto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V41_03705
Messenger RNA biogenesis [BR:
acto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V41_03705
Ribosome biogenesis [BR:
acto03009
]
Prokaryotic type
rRNA helicases
C3V41_03705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVM61323
LinkDB
All DBs
Position
916172..918706
Genome browser
AA seq
844 aa
AA seq
DB search
MSNDTNASAPLSLDALFNAETAGQEPPAAEEQTEQTERAEPLAVPHSSPGSPEDFASPAS
SDSPEDPEDVEHEDEDDDVERDVPEADPEDDAGDDADEGDTQTVEDDVDGHAPFLDSGDE
AEDEPGEAETTFADLGLPADLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGK
TAAFGLPLLDAVDAREGVVQALVLAPTRELALQSADAITDMAHRSRGLEVVAVYGGAPYG
PQIGALRDGAQVVVGTPGRIIDLIDKGALSLDSVRYFVLDEADEMLRMGFAEDVETIASS
LPEERRTALFSATMPPAIQAVARQHLTEPVQIEVSPQASTVDTVHQTYAVVPFRHKIGAV
SRVLAVTEAQAAIVFVRTKSTAEDVALELAGRGIQAAAISGDVPQRERERLVERLRAGTL
DVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKSK
LRQIERLTGTRLEEITLPSPADVSSHRATQLLERAASRYERGRLGMYTSLVDDKARELDV
SVGDLAATLLALAVGDEGPQRREGESSRGRERREVTVDDEGSFVSASFEGGRDGARRGRQ
ERGGNRGGRRQQHDGPGTVYRVEVGHRDRVMPGAIVGAIANEAGIPGSEIGKIDILQSFS
LVTVYAPLSESQLESLRHATFAGRELRMRLDDGPGHGWGGSRDDRGGRDGQWDRRGPRRD
YDDRGGRRFERDGDRGDRGFRGREDRGERGFRGGRDGDRGGFRGGRDGQWDRRGPRRDYD
DRGGRRFERDGDRGDRGFRGREDRGERSFRGGRDGDRGGFRGGRDSQWQDRRGPRREDRD
GRSY
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgacaccaatgcgtccgcgcccctgagcctggacgctctcttcaacgccgag
accgcgggccaggagccccctgccgccgaggagcagaccgagcagactgagcgggccgag
cccctggccgtcccccactcctcgcccggctcccccgaggacttcgcctcccccgcctcc
tccgactcccccgaggaccccgaggacgtggagcacgaggacgaggacgacgacgtcgag
cgcgacgtgcccgaggccgacccggaggacgacgccggggacgacgccgacgagggcgac
acccagaccgtcgaggacgacgtcgacggccacgcccccttcctggactccggggacgag
gccgaggatgagcccggtgaggccgagaccaccttcgccgacctcggcctgcccgcggac
ctgctcaaggccgtgaccgacatgggcttcgtgacccccaccgcgatccagaaggaggcc
atcccggtcctcctggccgggcgcgacgtggtgggcgtggcccagaccggtaccggtaag
accgccgccttcggcctgccgctgctcgacgccgtggacgcccgcgagggcgtcgtccag
gccctggtcctggcccccacccgcgagctcgccctccagagcgccgacgccattaccgac
atggcccaccgctcccgcggcctggaggtcgtcgccgtctacggcggcgccccctacggc
ccgcagatcggtgcgctgcgcgacggggcccaggtggtggtgggcacccccggccgcatt
atcgacctcattgacaagggtgccctgagcctggactcggtgcgctacttcgtgctggac
gaggccgacgagatgctgcgcatgggcttcgccgaggacgtggagaccattgcctcctcc
ctgcctgaggagcgtcgcacggccctgttctccgccaccatgccgcccgcgatccaggcc
gtcgcccgtcagcacctgactgagccggtccagatcgaggtctccccccaggcctccacg
gtggacaccgtccaccagacctacgccgtggtgcccttccgccacaagatcggtgcggtc
tcccgggtcctggccgtcaccgaggcccaggccgccatcgtgttcgtgcgcaccaagtcc
acggccgaggacgtggccctcgagctggccggccggggcatccaggccgccgccatctcc
ggggacgtcccccagcgtgagcgtgagcgcctggtcgagcgcctgcgcgccggcaccctg
gacgtgctggtggccaccgacgtggccgcccgcggcctggacgtggaccgtatcggcctg
gtggtcaacttcgacgtcccccgcgaggccgaggcctacgtgcaccgcatcgggcgtacc
gggcgcgccgggcgccacggggaggccgtgaccttcctgacccccaaggagaagtccaag
ctccgccagatcgagcgcctgaccggcacccgcctggaggagatcaccctgccctccccc
gccgacgtctcctcgcaccgcgccacccagctcctggagcgggccgcctcgcgctacgag
cgcggtcggctggggatgtacacctccctggtggacgacaaggccagggagctggacgtg
agcgtcggggacctggccgccaccctgctggcgctggccgtgggcgacgagggtccgcag
cggcgtgagggcgagtcctcccggggccgcgagcgccgtgaggtcaccgtggacgacgag
ggcagcttcgtgtcggcctccttcgagggcggccgggacggcgcccggcggggccgccag
gagcgtggtggcaaccggggcgggcgccgtcagcagcacgacggcccggggaccgtctac
cgcgtcgaggtcggtcaccgtgaccgtgtcatgcccggcgcgatcgtgggcgcgatcgcc
aacgaggccggtatccccggttccgagatcggtaagatcgacatcctccagtccttctcc
ctggtgaccgtctacgccccgctgagcgagagccagctggagtccctcaggcacgcgacc
tttgccggccgggagctgcgcatgcgtctggacgacgggcccggccacggctggggcggt
tcgcgcgacgaccgtggtgggcgtgacggccagtgggaccgccgcggcccgcgccgggac
tacgacgaccgtggtgggcgtcgtttcgagcgtgacggtgaccgcggggaccgcggcttc
cgtgggcgtgaggaccgtggtgagcgcggcttccgcggcgggcgcgacggcgaccggggc
ggcttccgtggtgggcgtgacggccagtgggaccgccgcggcccgcgccgggactacgac
gaccgtggtgggcgtcgtttcgagcgtgacggcgaccgcggggaccgcggcttccgcggg
cgtgaggaccgcggtgagcgcagcttccgcggcgggcgcgacggcgatcggggcggcttc
cgcggcggacgcgacagccagtggcaggaccgccgcggcccgcgccgggaggaccgggac
ggtcgctcctactga
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