Actinoallomurus sp. NBC_01490: OG417_24730
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Entry
OG417_24730 CDS
T09731
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
actq
Actinoallomurus sp. NBC_01490
Pathway
actq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
actq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OG417_24730 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actq03400
]
OG417_24730 (ligD)
Enzymes [BR:
actq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OG417_24730 (ligD)
DNA repair and recombination proteins [BR:
actq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OG417_24730 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WUV03848
LinkDB
All DBs
Position
complement(5267342..5268298)
Genome browser
AA seq
318 aa
AA seq
DB search
MGDLPLIRPMKAILTPRLPTDDDRWGYEFKWDGARAVTYVWDGRIRALSRNDRDITGSYP
ELAELVKLAGRLAVLDGEIVALRDGRPDFGLLQSRMHVLRPTEHLLQTVPVKYYVFDVMH
LDDRSLLDLTYTERRATLENLALSGRSIRTPPWFRDSGQDVLAASVGQGLEGVIAKRLQS
RYQPGRRTDDWLKIKNVRHQEVVVGGWRPGKGRRTDMIGSLLVGIPGERGLEYAGNVGTG
FTHTMLRDLAATLEPLERQTSPFATDVPRSHARDAHWVRPELVGEVAYTERTADGMLRHP
SWRGLRPDKSPEDVHAEP
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgggagacctgccactgatccggccgatgaaggcgattcttacacccaggctgccgacc
gacgacgatcgctgggggtatgagttcaagtgggacggggcccgggcggtcacctacgtg
tgggacgggcgcatacgggcgttgtcccgcaacgaccgggacatcaccggttcgtatccg
gagctcgccgagctcgtgaagctggctggacggctggcagtgctcgacggggagatcgtc
gccctccgcgacggccgaccggacttcgggctactgcaatcacgcatgcacgtgctgcgg
ccgaccgaacatctcctccagaccgtaccggtgaagtactacgtattcgacgtgatgcac
ctagacgatcgatctcttctcgacctgacgtataccgaacgccgcgcgacgttggagaat
ctcgccctatccggacggagcatccggactccgccgtggttcagggacagcggccaagat
gtgctggcggccagcgtcgggcagggactcgaaggcgtaatcgccaagcgcctacaatcc
cgctaccagccaggacggcggaccgacgactggctaaagatcaaaaacgtccgtcaccag
gaggttgtggtgggcggatggcggcccggcaagggccgccgcaccgacatgatcggatcg
ctgctcgtcggcatccccggcgagcgaggactggagtacgccggcaatgtcggcaccggg
ttcacccacaccatgctgcgcgacctcgcggccacgctcgagccgctggaacgccagacg
agcccattcgccaccgacgtaccacgcagccacgcgcgagacgcccactgggtacggccc
gaactcgtcggcgaggtcgcctacaccgagcggaccgccgacggcatgctccggcacccg
agctggcgcggcctccgccccgacaagagtcccgaggacgtgcacgccgaaccgtaa
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integrated database retrieval system
