Actinoallomurus sp. NBC_01490: OG417_43860
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Entry
OG417_43860 CDS
T09731
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actq
Actinoallomurus sp. NBC_01490
Pathway
actq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG417_43860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actq03400
]
OG417_43860 (mfd)
Enzymes [BR:
actq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG417_43860 (mfd)
DNA repair and recombination proteins [BR:
actq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG417_43860 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
WUU97267
UniProt:
A0AAU5X1F5
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All DBs
Position
complement(9563162..9566728)
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AA seq
1188 aa
AA seq
DB search
MTLSGLLDVASADPALVAAASGRDPRLDLVAPPALRPLLGAAFAREPGRTVLMVTATERE
AEDLTAALTSLLDPADVAAFPAWETLPHERLSPRSDTVGQRLAVLRRLAHGDPDDPAAGP
LRVVVAPVRAVLQPIVSGLGDLEPVRLRAQDEVELDDIVRRLVQAGYNRVDLVEKRGEIA
VRGGILDVFPPTEEHPLRVEFWGDQVEEIRYFKAADQRSLEVSRDGLWAPPCRELPLTES
VRERAKDLAREHPALADVLDQIADGSAVEGMEAFAPVLADHMELLLDVLPDASWVVVCDP
ERIRTRAAELVSTGQEFLEASWVNAAAGGEAPIDLGEAAYRTLEEVHGHAAELGLPWRTI
TPFASVDTTTRREYSDATGELTEVTEVSGEPDTDALRVGARAAESYRGDTQRVMADVKGW
IHDGWRVVLVTEGHGPAERLAEVVREEGLGARVADLDGPPEPALVNVACGRLDHGFVWDA
VRLAVLTETDLSGQKSSTKDMRRMPSRRRGGIDPLRLTPGDYIVHEQHGVGRYVEMASRT
VQGATREYLIIEYAKGDRLFVPTDQLEEVTRYVGGEAPSLHRLGGADWQKQKGRARKAVR
QIAGELIRLYSARQASPGHAFAADTPWQRELEDAFPYVETPDQLGAIDEVKSDMEKPVPM
DRLICGDVGYGKTEIAVRAAFKAIQDGRQVAVLVPTTLLVQQHLSTFSERFAAFPVNIKP
ISRFQTAGEVAETLRGLADGTVDLVIGTHRLLSPETRFKELGLVIIDEEQRFGVEHKERL
KEMRTQVDVLAMSATPIPRSLEMGLSGIREMSTILTPPEERHPVLTFVGPYDDKQIAAAI
RRELLREGQVFFVHNRVRSIDKVAKNLAELVPEARVGVAHGQMNEHQLEKIMVDFWEKEY
DVLVATTIVESGLDIPNANTLIVDRADMYGLSQLHQLRGRVGRGRERAYAYFLYPPEAPL
TETAHERLATIAQHTEMGAGMFVAMKDLEIRGSGNVLGAEQSGHIAGVGFDLYVRMVGEA
VRELREDGPAETPEVKVELPVDAHIPHEYVPGERLRLEAYRRIAGIQDGSEIEPVREELA
DRFGPLPVPVLNLLEVARFRALARRAGLTDVTLQGNHIRFSPVQLPDSRRVRLQRLYPKS
IVKAATNTLLVPTPKTAPLGGRPLRDQELLKWATDLVEALFLPEPVAQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttccggactgctcgacgtcgcctcggccgaccctgccctcgtggcggcggcc
tccggccgtgacccgcggctcgatctcgtcgcgccgcccgcgctgcggccgcttctcggc
gccgcgttcgcccgcgaacccggccgtaccgtgctgatggtcaccgccaccgagcgcgag
gccgaggacctcaccgccgcgctgacgagcctgctcgaccccgccgacgtcgcggcgttc
cccgcgtgggagacgctgccgcacgagcgcctgtcgccgcgctcggacaccgtcggccag
cgcctcgccgtgctgcggcggctggcgcacggcgacccggacgaccccgcggcgggtccg
ctgcgcgtcgtggtcgccccggtccgtgccgtgctgcagccgatcgtctccggcctcggc
gacctggagcccgtacgcctgcgcgcccaggacgaggtggagctcgacgacatcgtgcgc
cgcctggtccaggccggctacaaccgggtcgacctggtggagaagcgcggcgagatcgcg
gtgcgcggcggcatcctcgacgtcttcccgcccaccgaagaacacccgctgcgcgtggag
ttctggggcgaccaggtcgaggagatccgctacttcaaggccgccgaccagcgctcgctg
gaggtgtcgcgggacggcctgtgggcgccgccgtgccgtgagctgccgttgaccgagtcc
gtgcgcgagcgtgccaaggacctggcgcgcgagcacccggcgctggccgacgtgctcgac
cagatcgccgacggctcggcggtcgagggcatggaggcgttcgcgcccgtgctcgccgac
cacatggagctgctgctcgacgtgctgccggacgcctcctgggtggtcgtctgcgacccc
gagcgcatccgcacgcgggccgcggagctggtcagcaccggccaggagttcctcgaggcg
tcgtgggtcaacgccgccgcgggcggcgaggcgccgatcgacctcggcgaggccgcctac
cgcacgctggaggaggtccacgggcacgccgccgagctgggccttccgtggcggaccatc
acgccgttcgcgagtgtcgacacgaccacccggcgggagtactccgatgccacgggagag
ctgaccgaggtcaccgaggtgagcggcgagcccgacaccgacgcgctgcgcgtcggcgcg
cgcgccgccgagtcctaccgcggcgacacccagcgcgtgatggccgacgtgaagggctgg
atccacgacggctggcgcgtcgtgctcgtcaccgagggccacggcccggccgagcgcctc
gccgaggtcgtgcgcgaggagggcctcggcgccagggtcgccgacctggacggcccgccg
gagcccgcgctcgtgaacgtcgcctgcggccgcctcgaccacggcttcgtctgggacgcc
gtgcgcctcgcggtgctcaccgagaccgacctgtccgggcagaagtcctccaccaaggac
atgcgccgcatgccgtcgcgccgccgcggcggcatcgacccgctgaggctcactcccggc
gactacatcgtgcacgagcagcacggcgtcggccgctacgtcgagatggcgagccgtacg
gtccagggcgccacgcgcgagtacctcatcatcgagtacgccaagggcgaccggctgttc
gtgccgaccgaccagctcgaggaggtcacccgctacgtcggcggcgaggcgcccagcctg
caccggctcggcggcgccgactggcagaagcagaagggccgcgcccgcaaggcggtgcgc
cagatcgcgggcgagctgatccggctctactccgcccggcaggcctcgccggggcacgcg
ttcgcggccgacacgccgtggcagcgcgagctggaggacgccttcccgtacgtcgagacg
cccgaccagctcggcgcgatcgacgaggtcaagtccgacatggaaaagccggtgccgatg
gaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcg
ttcaaggcgatccaggacggccggcaggtcgcggtcctggtgccgacgacgctgctggtg
cagcagcacctgtcgacgttctccgagcgcttcgcggcgttcccggtgaacatcaagccg
atcagccggttccagaccgccggggaggtcgccgagacgctgcgcggtctcgccgacggc
accgtcgacctggtcatcggcacgcaccggctgctgtcgcccgagacccggttcaaggag
ctgggcctggtcatcatcgacgaggagcagcggttcggcgtcgagcacaaagaacgcctc
aaggagatgcgcacccaggtcgacgtcctggccatgtcggccacgccgatcccgcgcagc
ctggagatgggactgtccggcatccgtgagatgtcgacgatcctcaccccgcccgaggag
cggcacccggtcctgacgttcgtcggcccgtacgacgacaagcagatcgccgccgcgatc
cgccgcgagctgctccgcgagggccaggtcttcttcgtccacaaccgcgtgcgctcgatc
gacaaggtggccaagaacctcgccgagctggtgcccgaggcgcgggtcggcgtcgcgcac
ggccagatgaacgagcaccagctcgagaagatcatggtcgacttctgggagaaggagtac
gacgtcctggtcgccacgacgatcgtggagagcgggctggacatcccgaacgccaacacg
ctgatcgtcgaccgggccgacatgtacggcctgtcgcagctccaccagctgcgcggccgg
gtcgggcgcgggcgcgagcgcgcgtacgcctacttcctgtacccgcccgaggcgccgctc
accgagaccgcgcacgagcggctggccacgatcgcccagcacaccgagatgggcgcaggc
atgttcgtggccatgaaggacctggagatccggggttcgggcaacgtgctcggcgccgag
cagtccggccacatcgccggcgtgggcttcgacctgtacgtccggatggtcggcgaggcc
gtgcgcgagttgcgcgaggacggtccggccgagacgcccgaggtcaaggtcgagctgccg
gtcgacgcgcacatcccgcacgagtacgtcccgggggagcggttgcgcctggaggcgtac
cggcgcatcgcgggcatccaggacggctcggagatcgagcccgtccgcgaggagctcgcc
gaccgcttcggcccgctgccggtgccggtgctgaacctcctggaggtcgcgcggttccgc
gccctcgcgcgcagggccgggctgacggacgtcaccctgcagggcaaccacatccggttc
tcgcccgtgcagctgcccgactcgcgccgcgtccggctgcaacggctctaccccaagagc
atcgtcaaggccgcgaccaatacgctgctggtgccgacccccaagacggctccgctgggc
ggccgtccgctgcgcgaccaggagctgctgaaatgggccaccgacctcgtcgaggcactg
ttcctccccgagccggtggcacagtga
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