Actinoallomurus sp. NBC_01490: OG417_53635
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Entry
OG417_53635 CDS
T09731
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
actq
Actinoallomurus sp. NBC_01490
Pathway
actq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG417_53635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actq03019
]
OG417_53635
03400 DNA repair and recombination proteins [BR:
actq03400
]
OG417_53635
Enzymes [BR:
actq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG417_53635
Messenger RNA biogenesis [BR:
actq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OG417_53635
DNA repair and recombination proteins [BR:
actq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OG417_53635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF3553
AAA_30
DUF7343
PcrA_UvrD_tudor
HEM4
NADH_4Fe-4S
Motif
Other DBs
NCBI-ProteinID:
WUU99116
LinkDB
All DBs
Position
11657402..11659066
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AA seq
554 aa
AA seq
DB search
MGIRDGFRRFGRRRRQVQRTAREVFGWEELRPGQDEAMQHLLQGHDVLVVMPTGGGKSAT
YQIPAQLLDGPTIVISPLIALQRDQMLSLAERNAGGAVVVNSAQRAGSSESSLEQIRAGQ
AEYVFLSPEQLAKPEVVDKLVAARPSLIAIDEAHCVSAWGHDFRPDYLRLGRVIDRLGHP
PVIALTATASPPVREDIVEVLGLRNLRQVIRGFDRPNIGLRVRRFTEESDKRRALLEDVA
GRDGLGLVYVATRRDATAYAKELTEAGVRAEAYHAGMKTADRERVHTLFSEDGVDVVVAT
SAFGMGIDKPNVRYVLHSAPPESPDSYYQEIGRAGRDGEPAEAVLFYRSEDLGLRRFFAA
GRPDEEMLLRLATLLHEHGGTVKARAVRETLNVGASKLTGLVNLLQHAEAVEVGDRGELR
YAPKGPAPERAVADAMEFDESRRKMDDSRIDMMRGYAETTGCRRRYLLEYFGEPYARQTC
GNCDTCASGSVETARADTPFPIHSQVVHASWGAGTVMREEPDRITVLFEEIGYKTLSLDA
VQRDSLLTLASAKH
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgggcattcgcgatggtttccggcggttcgggcggcgacggcggcaggtgcagcggacc
gcccgtgaggtcttcggctgggaggagctgcggccgggccaggacgaggccatgcagcac
ctgctccagggccacgacgtcctcgtggtcatgccgaccggcggcgggaagtccgcgacg
taccagatccccgcccagctgctcgacggtcccaccatcgtgatctcgccgctgatcgcg
ctgcaacgcgaccagatgctgtccctcgccgagcggaacgccggcggcgcggtcgtggtc
aactccgcccagcgcgcgggttcgagcgagagctcgctggagcagattcgcgccggtcag
gccgagtacgtgttcctgtcgcccgagcagctcgccaagccggaggtggtcgacaagctc
gtcgcggcgcggccctcgctgatcgccatcgacgaggcgcactgcgtgtcggcctgggga
cacgacttccggcccgactacctccggctcggccgggtgatcgaccgcctgggccacccg
ccggtgatcgcgctgaccgcgaccgcctccccgcccgtacgcgaggacatcgtcgaggtg
ctcggcctgcggaacctacggcaggtcatccggggcttcgaccggcccaacatcgggctg
cgcgtccgccggttcaccgaggagtccgacaagcggcgggcgcttctggaggacgtcgcc
gggcgtgacggactcggcctcgtgtacgtcgccacccgccgcgacgccacggcgtacgcg
aaggagctgaccgaggccggcgtccgcgccgaggcgtaccacgccgggatgaagaccgcc
gaccgcgaacgggtgcacaccctgttctccgaggacggggtcgacgtggtggtggccacc
tcggcgttcggcatggggatcgacaagccgaacgtgcggtacgtcctgcacagcgcgccg
ccggagtcgccggactcctactaccaggagatcggccgcgccggtcgcgacggtgagccg
gccgaggcggtcctgttctaccggtccgaggacctgggcctgcgccggttcttcgccgcc
ggccggccggacgaggagatgctgctccggctcgccacgctcctccacgagcacggcggc
accgtgaaggcgcgcgcggtacgggagacgctgaacgtcggcgcgtccaagctgaccggc
ctggtcaacctgctccagcacgccgaggcggtggaggtcggcgaccgcggcgagctgcgg
tacgccccgaagggacccgcgccggagcgggcggtcgccgacgccatggagttcgacgag
agccgccgcaagatggacgactcgcgcatcgacatgatgcgggggtacgccgagacgacg
ggctgccgccgccggtacctgctggagtacttcggcgagccgtacgcccggcagacctgc
ggaaactgcgacacctgcgcgagcgggtcggtcgagacggcgcgggccgacacgcccttc
ccgatccactcccaggtggtccacgcgtcctggggcgccggaacggtcatgcgcgaggag
cccgaccggatcaccgtgctgttcgaggagatcggctacaagacgctctccctggacgcc
gtccagcgtgactccctgctcacgctcgcgtcggcgaagcactag
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