Actinoplanes sp. NBRC 14428: Asp14428_39350
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Entry
Asp14428_39350 CDS
T08315
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
actr
Actinoplanes sp. NBRC 14428
Pathway
actr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asp14428_39350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actr03019
]
Asp14428_39350
03400 DNA repair and recombination proteins [BR:
actr03400
]
Asp14428_39350
Enzymes [BR:
actr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asp14428_39350
Messenger RNA biogenesis [BR:
actr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Asp14428_39350
DNA repair and recombination proteins [BR:
actr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Asp14428_39350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCJ52460
LinkDB
All DBs
Position
complement(4199027..4201192)
Genome browser
AA seq
721 aa
AA seq
DB search
MVEMTQGAVSEAERAAVRECAEEVLRRLAGEHAVLREDQWRAIEALVVDRRRVLCVQRTG
WGKSAVYFVATALLRDGAAAEPGEPPAGPTVIVSPLLALMRNQVEAAARAGIRARTINSA
NLDEWGEITAEIRAGAVDVLLISPERLNNPDFRDNVLPGLAASTGLLVVDEAHCVSDWGH
DFRPDYRRLRTFLAGLPSRTPVLATTATANARVTADVADQLGDALVLRGTLDRDSLRLAV
LELPHAAHRLAWLADHLDRLPGSGIVYTLTVAAATETAEFLRSRGFAVASYTGQVEDADR
RAAEQDLLDNKIKALVATSALGMGFDKPDLGFVVHLGAPPSPIAYYQQVGRAGRAVEHAE
VVLLPGQEDTAIWRYFASLAFPPEEQVRAVLAALSPDRPLSTQALEPIVDLRRARLELML
KVLDVDGAVRRTRGGWTATGEPWTYDTARLRRVAEARNAEQQTMLEYARTTVCRMEFLRR
CLDDPEATPCGRCDTCTAPQFDAEVSPGSLAAANAFLGRAGVDIAPKKLWPTGMATVGVG
LKGKIPPAEQILPGRAVGRLSDQGWGSKLRALVGPEAPDGPVPADLAAAVVEVLKGWAHG
DDAWPQRPAAVVAVSSHRHPELVAGLAGHIATVGRLPMLGTLSSTHRGDGGPRGNSAQRV
LALHDAFSVPPEMAEALASLSGPVLLVDDLVDSGWTMVLAGRELRRAGGAGVLPLALAVA
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtggtggagatgacgcaaggggcagtcagcgaggcggagcgggccgccgtccgggagtgc
gccgaggaggttctgcggcgcctggccggcgagcatgccgtgctgcgcgaggaccagtgg
cgcgcgatcgaggcgctggtggtcgaccggcggcgggtgctgtgcgtgcagcgtacggga
tggggtaaatcggccgtttacttcgtcgccaccgcgcttctccgggacggtgccgccgcc
gagccgggcgagccgcccgccggcccgaccgtgatcgtttcgccgctgctcgcgctcatg
cgcaaccaggtcgaagccgcggcgcgggcgggcatccgggcgcggaccatcaactcggcc
aacctcgacgagtggggcgagatcaccgcggagatccgcgcgggcgccgtcgacgtgttg
ctgatcagccccgaacggctcaacaatcccgacttccgcgacaacgtgctgcccgggctg
gcggcgagcaccggcctgctggtcgtcgacgaggcgcattgcgtctccgactgggggcac
gacttccgccccgactaccggcggctgcggacgttccttgcagggcttccttcccgtacg
ccggtgctcgcgaccaccgcgacggccaacgcccgggtgaccgccgacgtcgccgaccag
ttgggcgacgcgctggtcctgcgcggcaccctcgaccgcgactcgttgcgcctggcggtg
ctggagctgccgcacgccgcccaccggctggcgtggctcgccgaccatctcgaccggctc
ccgggctcgggcatcgtctacacgctgaccgtcgccgcggccaccgagacggccgagttc
ctgcggtcgcgcgggttcgccgtcgcgtcgtacacgggccaggtcgaggacgccgaccgc
cgcgccgccgagcaggacctgctcgacaacaagatcaaggcgctggtggcgacgtctgcc
ctcggcatgggcttcgacaagcccgacctcggcttcgtcgtgcacctgggcgcaccgccg
tccccgatcgcgtattaccagcaggtcggccgggcgggccgggccgtggaacacgccgag
gtggtgctgctccccgggcaggaggacaccgcgatctggcgctacttcgcgtcgctggcc
ttcccgccggaggagcaggtccgcgcggtgctggccgcgctgtcaccggaccggccgctg
tccacccaggccctcgagccgatcgtcgacctgcggcgcgcccgcctcgagctcatgctc
aaggtgctcgacgtcgacggcgcggtccggcgcacgcgcgggggctggacagcgaccggc
gagccctggacctacgacaccgcccgactgcgccgcgtcgccgaggcgagaaacgccgag
caacagaccatgctcgagtacgcccgaacgaccgtgtgccgcatggagttcctccgcagg
tgcctcgacgaccccgaagcgacgccgtgcgggcgctgcgacacctgcaccgcgccgcag
ttcgacgccgaggtctccccgggatcgctggccgccgcgaacgccttcctcggccgcgcc
ggcgtcgacatcgcccccaagaagctctggccgaccggcatggccaccgtgggcgtcggc
ctcaagggcaagatcccgccggccgagcagatcctccccggccgcgccgtgggccgcctc
tccgaccagggctggggcagcaaactgcgcgcactcgtcggccccgaggctccggacgga
cccgtccctgccgacctggcggctgccgtggtcgaggtgctgaagggctgggcacacggc
gacgacgcctggccccagcgcccggcggcggtcgtggcggtgagctcgcatcgccacccg
gaactcgtcgccggcctggccggccacatcgcgacggtgggccggctcccgatgctggga
acgctgtcgtcaacccaccgcggcgacggcggaccgcgaggcaacagcgcgcagcgggtg
ctcgccctgcacgacgccttctcggtgccgccggagatggcggaggcgctcgcgagtctg
agcgggccggtgctgctggtggacgacctggtcgactcgggctggacgatggtgctggcg
ggccgggagctgagacgagcgggcggggcgggggtgttgcccctggcgttggccgtggcg
ggctga
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