Actinoplanes sp. NBRC 14428: Asp14428_62820
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Entry
Asp14428_62820 CDS
T08315
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
actr
Actinoplanes sp. NBRC 14428
Pathway
actr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asp14428_62820 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actr03019
]
Asp14428_62820 (rnj)
Messenger RNA biogenesis [BR:
actr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Asp14428_62820 (rnj)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
NotI
Motif
Other DBs
NCBI-ProteinID:
BCJ54807
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Position
6700879..6702567
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AA seq
562 aa
AA seq
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MSQAHVELDPPPPLPEGALRVIPLGGLGAIGRNMTVYEYDGKLLIVDCGVLFPDVEQPGV
DLILPDFDPIRERLEDIQAIVLTHGHEDHIGAVPYLLALKPDIPLVGSEFTLALVEAKLA
ERRLDPYTLTVREGGVERLGPFECEFFAVNHSIPDALAVAVRTPAGLVLHTGDFKMDQVP
LDGRITDLAGFARLGAEGVDLLLSDSTNAEIPGFVTPERDIGPVLNSIFGKARGRIIVAS
FASHVHRVQQVMDAAYEYERKVALIGRSMVRNMGIARDLGLLRIPDGLLVGLDEAAKMPH
DEIVFMSTGSQGEPMSALGRMSTGDHRHITIESGDTVVLASSLVPGNETSVYRVINQLAR
AGATVVHKDTAKVHVSGHAPAGELLYLLNVVRPSNLMPVHGEWRHLRAHAQLGIESGVAP
DRVVLCEDGDVVDLVEGHARHVGRVKNRYVHVDGLAVGDVSESLLTERRILGDGGFISAT
VVIDSVTGKVVGEPSVSAKGFSEDPEAFSPVIPLLTAALHRSAEEGITDTHQLQQVVRRT
VGRWVNDAYRRRPMIVPTVVEV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcacgtcgagctggatccgcccccgccgcttccggagggcgccctgcgc
gtcataccgctcggtgggctcggcgcgatcggccgcaacatgacggtctacgagtacgac
ggcaagctgctgatcgtcgactgcggcgtcctgttccccgacgtggagcagccgggcgtc
gacctcatcctgcccgacttcgacccgatccgggagcggctggaggacatccaggcgatc
gtcctgacccacgggcacgaggaccacatcggcgcggtgccgtacctgctcgccctcaag
ccggacatcccgctggtcgggtcggagttcacgctggcgctcgtcgaggcgaagctggcg
gagcggcggctggacccgtacacgctgaccgtgcgggagggcggcgtcgagcggctcgga
ccgttcgagtgcgagttcttcgcggtgaaccactccatcccggacgcgctggcggtcgcc
gtgcgtacgccggccggcctggtcctgcacaccggcgacttcaagatggaccaggtgccg
ctcgacggccggatcaccgacctcgccgggttcgcgcggctcggcgccgagggcgtcgac
ctgctgctgtcggactcgacgaacgccgagatccccggcttcgtgacgccggagcgggac
atcggcccggtgctcaactcgatcttcggcaaggcgcgcggccggatcatcgtggccagc
ttcgcctcgcacgtgcaccgggtgcagcaggtcatggacgccgcgtacgagtacgagcgc
aaggtcgcgctgatcggccgctcgatggtgcgcaacatgggcatcgcccgcgacctcggg
ctgctgcggatccccgacggcctgctggtcggcctggacgaggcggcgaagatgccgcac
gacgagatcgtgttcatgtccaccggttcgcagggcgagccgatgagcgcgctgggccgg
atgtccaccggcgaccaccggcacatcaccatcgagtccggcgacaccgtcgtgctggcc
agttcgctggtgcccggcaacgagacctccgtataccgggtcatcaaccagctcgcccgg
gccggcgccacggtcgtgcacaaggacaccgccaaggtgcacgtctccggccacgcgccg
gcgggggagctgctctacctgctcaacgtcgtacgcccgagcaatttgatgcccgtgcac
ggcgagtggcggcacctgcgcgcccacgcccagctcggcatcgaatcgggcgtcgcgccc
gaccgggtcgtcctctgcgaggacggcgacgtcgtggacctggtcgagggtcatgcccgg
cacgtcggccgggtcaagaaccgttacgtgcacgtggacggcctcgccgtcggcgacgtg
agcgagtcgctgctgaccgagcggcgcatcctcggcgacggcggcttcatctccgccacc
gtggtgatcgactcggtgaccggcaaggtggtcggcgagccgagcgtctccgcgaagggc
ttctccgaggacccggaggcattcagtccggtgatcccgttgctcaccgccgccctgcac
cgctcggcggaggaggggatcaccgacacgcaccagttgcagcaggtcgtccgccgtacg
gtgggccgctgggtcaacgacgcgtaccgccgccgcccgatgatcgtgcccaccgtggtt
gaggtttga
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