Actinoplanes sp. SE50: ACWT_0246
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Entry
ACWT_0246 CDS
T05392
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03090
RNA polymerase sigma-B factor
Organism
acts
Actinoplanes sp. SE50
Brite
KEGG Orthology (KO) [BR:
acts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acts03021
]
ACWT_0246
Transcription machinery [BR:
acts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACWT_0246
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
STAS
Sigma70_r4_2
Sigma70_r3
STAS_2
HTH_23
HTH_Crp_2
Sigma70_ECF
DUF1416
HTH_28
HTH_3
DUF134
KORA
HTH_10
Motif
Other DBs
NCBI-ProteinID:
ATO79661
LinkDB
All DBs
Position
complement(291496..292614)
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AA seq
372 aa
AA seq
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MPTTTGVTIEDDLDLIAEEYARLLATADQATDRRLRAEMIDRMVPFARRLAQRYRHSGEP
FEDLVQVASLGLVKAVSRYLPERGSFTAYAVATISGELKRHFRDHTWSVRAPRRLQHLAA
QTRVAEVELAHELGRAPTEGEVAQRCHIDSETLDEARTAASGYRAVSLSLPLGEGDGELA
DLLGSADPAFNQVADYLAVAKLARRLPPRVRRILILRFYQDRTQAQIAAEIGISQMHVSR
VLTRALTWLREALLQDTVPPWPGNDADPMDGRVVSRLRPDGATEARICGEIDADSAVLLQ
ETLMDTLRRLGGGALVLDLAGVSLLSAAGARVLRGVADAGRAHGVTVRLTGVRPTVRRVV
AVAGLTRLLAPA
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgcctacgacaactggggtgacgatcgaggacgacctcgatctgatcgccgaggagtac
gcgcgtctgctggccacggccgaccaggccaccgatcggcgcctgcgcgcggagatgatc
gatcggatggtgccgttcgcccggcgcctggcccagcgttaccggcacagcggcgagccg
ttcgaggacctcgtgcaggtcgcctccctcggcctggtcaaggccgtgtcccgctacctg
ccggagcgggggtcgttcaccgcgtacgccgtcgccacgatcagtggagagttgaagcgg
cacttccgggaccacacctggtcggtccgcgcgccgcgccgcctgcagcacctggccgcg
cagaccagggtggccgaggtcgagctggcgcacgagctgggccgggcgccgaccgagggg
gaggtggcgcagcgctgccacatcgactcggagacgctggacgaggcccggacggcggcg
agcggataccgtgccgtgtcgctgagtctgccgctcggcgagggcgacggcgagctcgcc
gatctgctgggcagcgccgaccccgcgttcaaccaggtcgccgactatctcgcggtggcc
aaactcgcccgccggctcccgccgcgggtccgccggatcctgatcctgcgcttctaccag
gaccgtacccaggcccagatcgccgccgagatcggcatctcgcagatgcacgtgtcccgg
gtgctcacccgggccctgacctggttgcgcgaggcgctgctgcaggacacggtgccgccc
tggccgggcaacgacgccgacccgatggacggccgggtggtcagccgcctgcggccggac
ggcgcgaccgaggcccggatctgcggcgagatcgacgcggacagcgccgtcctgctgcag
gagacactcatggacacgctgcgccggctgggcggcggcgcgctggtcctcgacctggcc
ggggtgtcgctgctgagcgccgccggagcgcgcgtgctgcgcggggtggcggacgccgga
cgcgcccacggcgtgacggtccggctgaccggtgtgcggcccaccgtccgccgggtcgtc
gcggtcgccggcctgacccgcctgctggcgcccgcctga
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