Actinoplanes sp. SE50: ACWT_7340
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Entry
ACWT_7340 CDS
T05392
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acts
Actinoplanes sp. SE50
Pathway
acts03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acts00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACWT_7340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acts03021
]
ACWT_7340
03019 Messenger RNA biogenesis [BR:
acts03019
]
ACWT_7340
Transcription machinery [BR:
acts03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACWT_7340
Messenger RNA biogenesis [BR:
acts03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACWT_7340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATO86755
LinkDB
All DBs
Position
complement(8259531..8261642)
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AA seq
703 aa
AA seq
DB search
MQFRVDSGFSDGRNPLSDTTDVTSGVSDVADGAGTTATATKRRRGGTGLSAMLLPELQSL
AASLGISGTARMRKGELITAISERQSGGSAAAEPAPRPRTEAAPAQSAPASAPAPASTPV
EKPQAAAPADSAPAAEAAPATERPSRRSRERAARETTPREATPVQAEAAPAVTEPAAVAA
PVADTTERAERPERGDRTRDRQRGERTDRGERTDRGERTDRGERPERAERADRGDRANER
GERTNDRGDRNDRGDRNNDRVNDRSGDRGPRTDQGHDDDDNDGEGGRRSRRSRFRDRRRG
RDRDDSPREDNRRDGGGREPHVSDDEVLVPVAGILDVLDNYAFVRTTGYLSGPNDVYVSM
SQVKKYGLRRGDAVTGAVRSAPRDGDGQRRDKYNPLVRLDTINGMEPDEARRRPEFYKLT
PLYPQERLRLETEPHILTTRIIDLVMPIGKGQRALIVSPPKAGKTMVLQALANAITRNNP
ECHLMVVLVDERPEEVTDMQRTVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDV
VVLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATAL
VETGSMMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVSASSTRKEEILLGKEELAII
HKLRKVLSSLESGAALDLLMDRLKQTRTNIEFLMQIAKSTPGE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcagttccgggtggactcgggtttttccgacggaaggaatccattgagcgacaccacc
gacgtgacgtcgggtgtttctgacgtcgctgacggcgccggcaccaccgcgaccgccacg
aagcgccgccgcggcggcaccgggctgtccgcgatgctgctgcccgagttgcagagcctc
gccgcctccctgggcatctccggcacggcccggatgcgcaagggcgagctgatcaccgcg
atctccgagcggcagagcggtggctccgccgcggccgagccggctccgcggccgcggacc
gaggccgccccggcccagtcggcccccgcttcggccccggctccggcttcgactccggtg
gagaagccgcaggccgccgctcccgcggacagcgcgccggccgccgaggccgccccggcc
acggagcgcccgtcccggcgcagccgtgagcgggccgcccgggagaccaccccccgcgag
gccaccccggtgcaggccgaggccgccccggccgtcaccgagccggccgccgtggccgct
cccgtggccgacaccaccgagcgcgccgagcgcccggagcgtggcgaccgcacccgtgac
cggcagcgcggtgagcgcaccgaccgcggtgagcgcaccgaccgcggtgagcgcaccgac
cgcggtgagcgtccggagcgggccgagcgtgccgaccgcggtgaccgcgccaacgagcgc
ggggagcgcaccaacgaccggggcgaccgcaacgaccgcggggaccggaacaacgaccgg
gtcaacgaccgttccggcgaccggggcccgcgcaccgaccagggtcacgacgacgacgac
aacgacggtgagggtggccgccggagccggcgcagccgttttcgggaccgtcgccgtggc
cgcgaccgcgacgacagcccgcgcgaggacaaccggcgtgacggtggcggccgtgagccg
cacgtctccgacgacgaggtgctcgtcccggtggccggcatcctcgacgtgctggacaac
tacgcgttcgtccggaccaccggttacctctccggcccgaacgacgtgtacgtctcgatg
tcgcaggtcaagaagtacggcctgcgccgcggggacgcggtcaccggtgcggtccgctcc
gccccgcgcgacggcgacgggcagcggcgggacaagtacaacccgctggtccgcctggac
accatcaacgggatggagcccgacgaggcccgccggcgtcccgagttctacaagctgacg
ccgctctacccgcaggagcgcctgcggctggagaccgagccgcacatcctcaccacccgc
atcatcgacctggtgatgccgatcggtaagggccagcgcgcgctcatcgtctccccgccg
aaggccggtaagacgatggtgctgcaggctctggccaacgcgatcacccgcaacaacccc
gagtgccacctgatggtcgtgctcgtggacgagcggcccgaagaggtcaccgacatgcag
cgcacggtcaagggcgaggtcatcgcggccacgttcgaccgcccgccgcaggaccacacc
acggtcgccgagctcgccatcgagcgggccaagcggctggtcgagctgggccacgacgtc
gtcgtgctgctcgactcggtgacccgcctcggccggtcgtacaacctggccgcgccggcc
tccggccggatcatgtcgggtggtatcgactcgaccgcgctctacccgccgaagcggttc
ctcggcgcggcgcgcaacatcgagaacggtggctcgctgaccatcctcgcgaccgcgctg
gtcgagaccgggtcgatgatggacacggtcatcttcgaggagttcaagggcaccggcaac
gccgagctcaagctggaccggaagatcgccgacaagcgggtcttcccggccgtggacgtc
tccgcctccagcacccggaaggaagagatccttctcggcaaggaggagctggcgatcatc
cacaagctccgcaaggtgctcagctcgctggagtccggcgccgccctggacctgctgatg
gaccggctcaagcagacccggaccaacatcgagttcctgatgcagatcgccaagtcgaca
cccggcgagtaa
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