Actinobaculum sp. 313: DDD63_03580
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Entry
DDD63_03580 CDS
T05430
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
actt
Actinobaculum sp. 313
Pathway
actt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
actt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDD63_03580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actt03021
]
DDD63_03580
03400 DNA repair and recombination proteins [BR:
actt03400
]
DDD63_03580
Enzymes [BR:
actt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDD63_03580
Transcription machinery [BR:
actt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDD63_03580
DNA repair and recombination proteins [BR:
actt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDD63_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
AWE41986
LinkDB
All DBs
Position
840459..844328
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNRFDQLHIALATSEDVRKWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRPRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTDVDEQSRHDDMATLQSEYELERVALEKSRDVDLEARQQKLEAD
LAAAEAEGQKSDAKNRLKRSAENELGRIRKRAEQDIARLDDVWERFTKLKVGDLEGDEDL
YREMESRYSDYFSACRGAEAIQKRLQTYDLQAEHDHLVEVIETGTAQRKARALKRIKVVN
AFLHSGTSPEAMVLDALPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL
GAPEIMVNNEKRMLQEAVDALFDNGRRGRPVQGAGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKIMALELFKPFVQKRLVDLEIAKNIKAAKRLIDRQR
TEVWDVLEEVIQEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIRLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLSANNILKPSDGRPVTMPAQDMIIGLFHLTTLREGLAGEGR
YFSSVAEAQMAADLGELHLNSKCHIRFEADVVPPRDWEGEEGAPLLLETTLGRAIFNETL
PVDFPYVNEVVDKGVLGGIVNQLAERYEKVAVGASLDALKSTGFYWAGRSGATIAVSDVV
VPESKSGILEKAEQEAARIESQFMTGRIEDEDRRRDLVDLWSEVTDTVAKEMRANFDATN
TVNRMVSSGARGNWEQVRQIAGMRGLVADPKGAIIPRPIRSNYREGLSVLEYFMATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIVREQDCGTRRGLTKTIARPGENRLVPDEMLDV
SVYARTLARDITDESGEVLAAAGTDLGDAVIEKLIAAGITEVTVRSVLTCESRVGTCAMC
YGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELFE
ARTPKGEAPIAEAAGRLQIEDGERTRRLVIVRDDGDDDLVYQVSKRGKLLVQEGGHVEVG
QQLVEGSVDPKKVLRITGRRAAQQHIVAEVQTVYRSQGVEIHDKHIEVIVRQMLRRVTIL
EAGTTKLLPGELVDVAVFEDENRAAMAEGGKPASGRPELMGITKASLATDSWLSAASFQE
TTKVLTEAALNSKSDPLSGLKENVILGKLIPAGTGLEQLRSATVEPTTEARVEFEKSNGF
SHRDLEAFDDGFSYGEFPDFDLTAGYGPY
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaatcgcttcgatcagctccacatcgccctggccacttcggaggatgtc
cgaaagtggtcgcacggcgaggtgaaaaagccagagaccatcaactaccgcactcttaag
ccggagaaggacggcctgttctgcgaacgcattttcggccccacccgtgactgggagtgc
gcctgcggtaagtacaagcgcccccgtttcaagggcatcgtatgtgagcgctgcggtgtg
gaagtcacccgctccaaggtgcgccgtgagcgcatggggcatattgaactggccgctccc
gtcactcatatctggtacttcaagggtgttccttctcgcttgggctatctgctggatatc
gcaccgaaggatctggagaaggtcatctacttcgcggcctacatggtcacggatgttgat
gaacagtcccgtcacgacgacatggcaactctgcagtccgaatacgaactggagcgtgtc
gccctggagaagtcgcgggatgtcgacctggaggcacgccagcagaagctggaagccgat
ctcgccgccgctgaggcggagggccagaagtccgatgcgaagaaccggctgaagcggtcc
gcagaaaacgaactgggccgcatccgtaagcgcgccgaacaggacatcgcgcgtctcgac
gacgtttgggagcgtttcaccaagctaaaggtcggcgacctggaaggtgacgaggatctg
tatcgcgagatggagtcccgttactcggattacttctccgcctgccgcggcgccgaggcc
atccagaaacgcctgcagacctacgatctgcaggccgagcatgatcacctcgtcgaggtt
attgagaccggtaccgcgcaacgcaaggcgcgtgctctgaagcgcatcaaggtggtcaac
gcctttttgcactccggcactagcccggaggcaatggtcttggacgccctgcccgtgatc
ccgccggatctgcggccgatggtgcagttggacggcggacgttttgccacatcggatctt
aacgatctctaccggcgcgtgatcaatcggaataaccgtctcaagcgcatgcttgatttg
ggcgcaccggagatcatggtgaacaacgagaagcgcatgctgcaggaagcggtggatgcc
ctctttgataacggacggcgtggccgcccggtgcagggagccggtaaccgcccgctcaag
tcgctctccgacatgctcaagggcaagcaggggcgtttccgccagaacctgctcggtaag
cgagtggactactccgggcgctccgtgatcgtcgtcggtccgacgctgaaactgcaccag
tgcggtctgccgaagatcatggccttggagctgttcaagcccttcgtgcagaagcgtctg
gttgacctggagatcgcgaagaacatcaaggccgccaagcgcttgatcgaccggcagcgc
accgaggtatgggacgtactggaagaggtcatccaggagcatccggtattgctgaaccgg
gcacccaccctgcatcgcctgggcattcaggccttcgaaccgcagctgatcgagggtaag
gccatccgcctgcacccgctggtctgcgcggctttcaatgccgacttcgacggcgaccag
atggccgtccatctgccgctgtcagtggaggcgcaggctgaggcgcgtatcctcatgctc
tctgccaacaacatcctcaagccgtctgacggacgcccggtgaccatgcccgcacaggat
atgatcatcggtctgttccacctcacgacgctgcgtgagggactggccggtgaggggcgg
tacttctcgtcggtggccgaggcgcaaatggccgcagacctgggtgagttgcatctgaat
tcgaagtgccacatccgtttcgaggccgacgtggttccgccgcgtgattgggaaggcgag
gagggcgcacccctcctgctggagaccacgctggggcgggcgatcttcaatgagaccttg
ccggtggatttcccgtacgtgaatgaggtcgtggacaagggtgtgttgggcggcatcgtc
aaccagctcgccgagcgctacgagaaggtggccgttggggcttccctcgacgcgctgaaa
tccaccgggttctactgggcgggacgctccggcgcgacgattgccgtgtccgacgtcgtc
gttccggaaagcaagtccgggattctggagaaggcggagcaggaagctgctcgcatcgag
agccagttcatgaccggtcgtattgaagacgaagaccgtcgccgcgacctggtggacctg
tggtccgaggtcaccgatacggtggccaaggagatgcgcgcgaacttcgacgcgacgaat
accgtgaaccgcatggtctcctccggtgcccgtggtaactgggagcaggtgcgccagatc
gccggtatgcgcgggttggtggcagacccgaagggtgcgattatcccgcgccccatccgt
tccaattaccgcgagggactctctgttctcgagtactttatggcgacgcacggcgcccgc
aagggtctggcggataccgcgctgcggacggctgactccggttacctgacccgccgcctg
gtggacgtgtcgcaggacgttatcgtgcgagagcaggactgcggcacacggcgcggtctg
acgaagaccatcgcccgcccgggcgagaacagactggttccggacgagatgctggatgtg
tccgtgtacgcccgcacactggcccgtgatatcacggatgaatccggagaggtgctggcg
gccgccgggaccgacctgggcgacgccgtcatcgagaagctgattgccgccggtatcacc
gaggtgactgtgcgctccgtgctgacatgcgaatcgcgggtcggcacctgcgccatgtgc
tacggtcgttcgatggccaccggaaagctggtcgacatcggcgaagccgtcggcattgtc
gcggcgcagtccattggtgagcccggcacgcagctgacgatgcggaccttccacaccggt
ggttcggcgtcggccgacgacatcacccagggtctgccgcgtgtgcaggagcttttcgag
gcccgcacgccaaagggcgaggcgccgatcgccgaggctgccggacgtttgcaaatcgag
gacggcgaacgtacccgtcgtctcgtcattgtgcgtgacgacggcgacgatgacctcgtc
taccaggtgtccaagcgcggcaagctcctcgtacaggaaggcggccacgtggaggttggc
cagcagttggtcgaaggctccgtggacccgaagaaggtattgcgtatcaccggacgacgt
gctgcccagcagcacatcgttgccgaggtgcagaccgtgtaccggtcgcagggcgtggaa
atccatgacaaacacatcgaggtcatcgtgcggcagatgctgcgccgcgtcacaatcctg
gaggcgggcaccacgaagctgctccccggtgagctggtcgatgttgccgtcttcgaggat
gagaaccgtgccgccatggcggagggtgggaaaccggcctctggacgtccggagctcatg
ggaatcaccaaagcctcactggcaacggattcctggctctcggccgcatccttccaggag
accacgaaggtacttacggaggccgcgctcaactccaagtccgatccgctgtctggcttg
aaagagaacgtcatcctcggaaagctcatcccggccggcaccggcctggagcagctccgc
tcggcaaccgtggagcccaccaccgaagcacgtgtggaatttgagaagagtaacggcttc
tcgcatcgagatctggaagccttcgatgatggtttctcctacggcgagtttccagatttt
gatctgacagcgggttacggcccgtattga
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