Actinobaculum sp. 313: DDD63_05010
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Entry
DDD63_05010 CDS
T05430
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
actt
Actinobaculum sp. 313
Pathway
actt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
actt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDD63_05010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actt03400
]
DDD63_05010
Enzymes [BR:
actt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DDD63_05010
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DDD63_05010
DNA repair and recombination proteins [BR:
actt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DDD63_05010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AWE42217
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All DBs
Position
1164659..1165501
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AA seq
280 aa
AA seq
DB search
MPELPEVETIRRGLERHVLGRTIVGVKSYGERVVRRAPQGLEPLKNSRISAVVRRGKFLW
FDLGDAALVAHLGMSGQFRLGGCVRHTRAVLTLDDGQRLIFADQRTFGYLAPDFWAPSAV
PGGEGSQRCAIPSMVQHIARDLLDPALDRQRLSERTCRKKTPIKTALLDQTLVSGIGSIY
ADEALFAARIHPLRPANTLTGQSVFHLYTEASAVLEAALMVGGTSFDALYVGVDGETGYF
EISLQAYGRSGRPCSRCGNTLETLRISGRSAVFCPFCQPL
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaggtggagaccatccgtcgcgggctggaacggcatgtgctgggg
cggacgattgttggggtgaagtcctacggtgagcgggtcgtccgccgtgcaccgcaaggg
ttggagccgctgaagaacagccgcatcagtgccgtggtcaggcgaggcaagttcctctgg
ttcgaccttggcgacgcggcactggtggcccatctgggaatgtccggccagtttcgactg
ggaggttgcgtgcggcacacccgcgccgttctcaccctcgacgacggccaacgcctcatc
tttgccgatcaacgaacattcggctacctcgccccagatttctgggcgcccagcgcggtt
ccgggcggtgagggcagccaacggtgtgcgattcccagtatggtgcagcatattgcgcgt
gacctgttggatcccgcgctggaccggcagcgtttgtccgagcggacgtgccggaagaag
acgccgatcaaaaccgcgttactcgatcagacactggtatccgggatcggatcgatttac
gcggacgaagcgctgttcgcggcgcgcattcacccgttgcggccggcgaacacgctgact
ggccagagcgtgtttcacctgtacacggaggcctcggcggttctggaggcagcgctgatg
gtgggtggaacgtcttttgatgccctgtacgtgggagtcgacggcgaaacgggctacttc
gagatttctctccaggcctacgggcgtagtggaaggccgtgcagtcgctgcggaaacacg
cttgagacgctgcgcatatcgggacgttcggccgtgttttgcccattttgccagccactg
tga
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