Actinobaculum sp. 313: DDD63_05045
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Entry
DDD63_05045 CDS
T05430
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
actt
Actinobaculum sp. 313
Pathway
actt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD63_05045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actt03019
]
DDD63_05045
03009 Ribosome biogenesis [BR:
actt03009
]
DDD63_05045
Enzymes [BR:
actt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DDD63_05045
Messenger RNA biogenesis [BR:
actt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DDD63_05045
Ribosome biogenesis [BR:
actt03009
]
Prokaryotic type
rRNA processing factors
DDD63_05045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWE42222
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All DBs
Position
1174622..1177636
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AA seq
1004 aa
AA seq
DB search
MADKATTSDDIARVGDENVEETSAKENTAARAATTKKKTATGTRKKVGRASASESVPDAG
SPEEPGAETNATPKTRSTARKSTARIRSARTPRVTEDQDTGENPVDAAAQVYEREEGGEP
GARGAAKKSTRARARKKAAGDVVSEDASSAVAASLAALEERAPARTSRAAKVAGEPLADF
GIDLDAIPPRGSSKRKSASAAEHARTPDGAADTDAVVSSGPTDSGVEPVGMTALLFQEPD
TSSLFREPETRISRRRGSSRSNTAASTTDDDSVTPATRKRTRGSRSAASADKTDNHTRRG
NEKDVITEESSAHSSPSVGSTDSAPTPAEAASATREARRRRRGTRGRRRTEETNEEKRTT
EATNAAAEQTEADDADSTTTRRRRRRRANGENGDEVTALKGSTRLEAKRQRRKEGREAGR
RRHVITESEYLARRESVKREMLVREQDGLNQIAVLEDDILVEHYVARHTQVSMVGNVYLG
RIQNVLPSMEAAFVDIGKGRNAVLYAGEVNWEAAGMEGKPRRIEQALKSGDTVMVQVTKD
PIGHKGARLTAQITLAGRHLVLVPSGAMTGISRKLPDKERHRLKRLLRQIVPEEHGVIVR
TAAEGATEEQLRADVERLTKTWEDIQAKAKNTKAAPMLLKGEPELAVRVVRDIFNEDFAA
LKVQGRDAWQTISDYVGELSPELVDRLQHWTSPDDIFAEHRVDEQLAKAFDRKVWLPSGG
TLVIDRTEAMTVIDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFI
DMVLESNRELVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTTCEACE
GRGFITHTHPVEQPAGLRDGGFARRKTRGRVEQRAVGAGARTSGTPDEKHSDVKAALNSI
AAAASHHREAEAKEEDAGTASVPPSASSAVKKDSAPEAESSKSEAQEAPPQEQATKAADA
GEVQPQPSEPKSTARKKSKTHRVSSAGTITPGAGTAAILSFPAK
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaagccacaacgtcggacgatatcgcgcgcgttggtgacgaaaacgtggaa
gagacgtccgcgaaggagaatactgcggcacgggctgcgactacaaaaaagaaaaccgcg
acaggaacgaggaaaaaggtcggccgtgcgtcggcatccgagtccgttccagatgcaggc
tcaccggaagagccgggcgctgaaacgaatgccacgccgaaaacgcgaagcactgcgcgc
aagtcaacggcaagaattcgaagcgctagaacgccgcgggtgaccgaagatcaagatacg
ggtgagaacccggttgatgcggcggcccaggtgtacgagcgcgaggaaggtggcgaaccg
ggtgcgcgaggcgcagctaagaagtcaactcgcgctcgtgcgcggaagaaggcagcgggc
gacgttgtcagcgaagatgcatccagcgcggtggcggcgtcattggccgcgttggaagaa
cgcgcaccggcgaggacttcgcgggcagccaaagtagcgggtgagccgcttgccgacttt
ggaattgatcttgatgcgattccgccgcggggtagctccaaacgtaagtcggcatccgct
gcggagcacgcccgcactccagacggcgctgccgatacggacgccgtcgtgagctcaggg
cctacagatagcggtgtggaacctgtgggtatgacggcgcttttgttccaagagccggac
acgtcgagtctcttccgcgagccggagactcgcatctcacgacggcggggcagtagccgt
agtaatacagcggcatcaaccaccgacgacgatagtgtcacgcccgcaacacgtaagcgg
acccgcggaagccggagcgcggcctcggccgacaagaccgacaaccacacgcgccgtggt
aacgaaaaggatgtcatcaccgaggagtccagcgcacacagttcgccgagtgtgggaagc
accgattcggccccgacgcccgcagaggctgcttctgccactcgcgaagcgcggcgtcgt
cggcgcggcacacgcggccgccgtcggacagaggaaacgaacgaagagaaaaggacgacg
gaggcgacgaacgccgcagcggagcagactgaggccgatgatgcagattcgacaacgacg
cgtcgtcggcggcgtcgccgggcgaatggtgagaacggcgacgaggtcacggccctgaag
ggctccactcgtctggaggccaagcggcagcgtcgtaaagaaggccgtgaggctggacga
cgtcggcatgtgatcaccgagtctgagtatctggcccggcgtgaatcggtgaaacgtgag
atgctcgtacgtgagcaggacggcttgaaccagattgcggtgctcgaggatgacattctc
gtggagcactacgttgctcgccacacccaggtttccatggtgggcaatgtgtacctcggg
cgcatccagaacgtactaccgtccatggaggcggctttcgttgatattggcaaggggcgc
aacgccgttctctacgccggtgaagtcaactgggaagccgcgggcatggaagggaagccg
cgacggatcgaacaggcactgaaatccggcgataccgttatggtgcaagtgacgaaggat
ccgatcgggcataagggtgcgcgactgacagcacagatcaccctggccggaaggcatctt
gttctcgttccgtcgggcgcgatgaccggcatttccaggaagcttccggataaggaacgt
catcgcctgaagcggctactgcggcagatcgtgccggaagaacacggcgtcattgtgcgc
accgcggcggaaggcgccaccgaagagcagttgcgcgccgatgtggagcgtttgacgaag
acctgggaagacatccaggccaaggcgaagaacacaaaggccgcgccgatgctgttgaag
ggcgagccggaactagccgtgcgcgttgttcgcgatatcttcaacgaagatttcgctgct
ttgaaggtgcagggccgcgacgcatggcagaccatcagcgattatgtgggggagttgtct
cccgaactggtggaccgcctgcaacattggacgagcccggacgatatcttcgccgaacat
cgtgtggatgagcagttggcgaaggcttttgatcgcaaggtatggctgccgtcgggcggt
acgttggtgatcgaccgtaccgaggcgatgacggttatcgatgtcaacaccggtaaattc
acgggtagtggcggcactctcgaagagacggtcacgcgtaacaacctcgaagcggccgag
gagatcgttcgccagctacgcctgcgggacatcgggggaatcatcgtcatcgacttcatc
gatatggtgctggaatccaaccgcgagttggtgctgcggcgccttgtcgaatgtctgggc
agggatcggactcgtcaccaggttgccgaggtcacctccctgggcctggtgcagatgacg
aggaagcgcgtgggtcaagggctcgtggaggctttttcgacgacctgcgaggcctgcgag
ggtcgtggctttatcactcatacccatccggtggagcagccggcaggcctgcgtgacggc
ggtttcgcacgtcgtaagacgcgcggtcgagtggagcagcgcgcagttggcgccggtgcg
cggacatccggaacgccggatgagaagcacagcgatgtcaaggctgccctgaattccatt
gccgctgccgcctcccaccatcgcgaggccgaggccaaggaagaagatgctggtacggca
tccgtaccgccgtctgcatcgagtgcggtgaagaaggattcggcgcctgaggcagagtca
tccaagtccgaggcgcaggaagctccgccgcaggagcaggcgaccaaggccgccgatgcg
ggtgaagttcaaccgcagccgtcagaaccgaagtcgacggctcgaaagaagagcaagacc
caccgggtctcttcggcaggaacaattacccccggcgcgggtacggctgcaattctcagt
tttcccgccaagtga
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