Actinobaculum sp. 313: DDD63_05725
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Entry
DDD63_05725 CDS
T05430
Name
(GenBank) DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
actt
Actinobaculum sp. 313
Pathway
actt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD63_05725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actt03019
]
DDD63_05725
03009 Ribosome biogenesis [BR:
actt03009
]
DDD63_05725
Enzymes [BR:
actt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDD63_05725
Messenger RNA biogenesis [BR:
actt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDD63_05725
Ribosome biogenesis [BR:
actt03009
]
Prokaryotic type
rRNA helicases
DDD63_05725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWE42332
LinkDB
All DBs
Position
complement(1325703..1327850)
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AA seq
715 aa
AA seq
DB search
MCQECVRQARSVCFVARAGPATTGMYMSEPLTVPAGVPVDDVDSPATSADDINSTDLSFA
DLDLPEDLLAAVTDRGFLSPTAIQAKAIPPLMAGRDVVGVAQTGTGKTAAFALPLLAHID
PESERVQALVLAPTRELAMQGAEAVESFAAHSRNVEVVAVYGGAPYGPQLRALENGAQVV
VGTPGRIMDLMDRGALQLDGVGYFVLDEADEMLRMGFAEDVESIAGALPSERISALFSAT
MPPPIRRVAERHLREPVEVTISRPASTVATVHQTFAVVPQRHKIGALARVLAVSEADAAL
VFVRTRATAEDLAIELGARGVSTAALSGDVAQRDRERLVARLRDGTLDVLVATDVAARGL
DVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESLTFVTPKERARLRRIEKQTSSHME
QVELPTAAEVSKLRAYKLLDKARQRFANGRLGVYREVMEQFDERESTAPEPFSRDDLILA
LLAIGVRDPGPAADEEPESLTVREPERSRGWERKERRSQPTLENAVRYRVEVGHKDRVKP
GAIVGAITGEGGISGSDLGHIDIFPTFSLVEIGVPLSPEARRRIAQARVSGRELRITEDT
GPRHSDTRHGDDAGRSDRREGGRDRGNRRREDRTGFRSRGGDQAGRGRTRFGDKDRRYER
GGYSRTDRSRAGGNGRSTRGSSYRDDRVGYGRRSSSAGRGYGKRSGGNRNNQRDY
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcaagagtgtgtgcggcaggcgcgcagtgtctgcttcgtggcgcgcgctggacca
gcaaccacaggtatgtacatgtctgagccattaacggtgcccgcgggcgtgccggtcgac
gacgtcgactccccagccactagcgccgatgatattaattccaccgatctttccttcgcc
gacctcgatctgccagaggatctgctcgccgccgtgaccgatcgcggtttcctttctccg
actgccattcaagcaaaggcgattccccctctcatggccggacgcgacgtcgtcggtgtg
gcgcaaaccggtaccggaaagacggcggccttcgcactaccgctactggcgcatatcgat
cctgagtccgagcgggtgcaggctctcgtcctcgcgcccacccgcgagcttgccatgcaa
ggtgcggaggcggtggagtccttcgccgctcattcccgaaatgtcgaagtagtggcggtc
tacggcggtgcgccctacggcccgcaactgcgggcgctggagaacggggcacaggttgtg
gtcggcactcccggccggattatggacctcatggaccgcggcgcattgcaactggacggg
gttggctactttgttctcgacgaagccgacgaaatgctgcgcatgggctttgccgaagac
gtggagagcatagccggggccctaccgtccgagcgtatctcggctctcttctccgccacc
atgccgccgccgatccggcgcgttgccgagcggcatctcagagaaccggtcgaagtgacg
atctcccgcccggcctccaccgtggccaccgtgcaccagaccttcgcggttgtgccccag
cgccacaaaattggtgccctggctcgagtcctagccgtttccgaggcggacgctgcactt
gtttttgtgcgaactcgggccaccgctgaagacctggccattgagctgggagcgcgcggc
gtctccaccgctgctctctccggtgatgttgcacagcgtgaccgggagcggctcgtcgcg
cgcctgcgcgacgggacacttgacgtgctcgtcgcaaccgacgtcgccgcacgcggtctt
gatgtggaccgaatcggactcgttgtgaactttgatgttccgcgtgagacggatacatat
gttcatcgcattggccgtaccggccgcgcggggcgcaccggtgagtcacttacctttgtc
acgccgaaggaaagagcgcgtctgcgccgtattgaaaagcagacgtcttcacatatggag
caggtggaactgcccaccgccgccgaggtgtccaaacttcgcgcctacaagctgctcgat
aaggcgcggcagcgcttcgcgaacggtcggctcggcgtataccgcgaggtcatggagcag
tttgatgaacgcgagtccaccgcaccagaacctttcagccgcgacgatctgatcctggca
cttctggccatcggcgtgcgcgatccgggaccagcggctgacgaggaacccgaaagtctc
acggtccgagaacccgaacgaagccgtgggtgggagcgcaaggagcggcgttcgcagccc
acactggaaaacgcggtacgttaccgtgtggaagtcggtcacaaggatcgcgtgaaaccc
ggggcaatcgtcggcgcgattaccggtgaaggtgggatttccggttccgatctggggcat
attgacatcttccccaccttctcgctggtcgaaatcggtgttcccctctcccccgaagca
cggcgccgcatcgcgcaggcgcgcgtttccgggcgtgagttgcgcatcaccgaggatacc
ggtccgcgtcattcggatacgcgccacggtgatgatgcgggacgtagcgaccggcgcgaa
ggcggtagagaccgcggtaaccgccgccgcgaagaccgtaccggattccgctcccgtggc
ggcgaccaggcgggccgggggcgcacacgcttcggagataaggatcgtcgctatgagaga
ggcggatattcgcgcacggatcgctctcgtgccggcggtaacggtcgctctacgcgtggt
tcctcctaccgcgatgatcgagtcggctatgggcgccgcagttcctccgccgggcgcggt
tacggcaagcggtccggaggtaaccgcaacaatcagcgtgactactaa
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