Actinobaculum sp. 313: DDD63_09255
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Entry
DDD63_09255 CDS
T05430
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
actt
Actinobaculum sp. 313
Pathway
actt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD63_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actt03021
]
DDD63_09255
03019 Messenger RNA biogenesis [BR:
actt03019
]
DDD63_09255
Transcription machinery [BR:
actt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DDD63_09255
Messenger RNA biogenesis [BR:
actt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DDD63_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AWE43499
LinkDB
All DBs
Position
complement(2137068..2139146)
Genome browser
AA seq
692 aa
AA seq
DB search
MRLPELKALAQSLGLEVGPKVRRADLIAAIREMRGPARRGRPPKNASNAVPMSQTADSAP
TAASSAAKEEEAGVFDPALRQRYARTSPRTAEGSAAPGQSSGEEMSSEHAQQANDRTRRV
RERSHSSEADSSSETQPRERTAQTSRYDRSTSRTGGRVSSYDRTSRFDRSERNAGRTSRY
DRTSRFERTERSTTAQASEGSRRIARTTDEIVLPERSSRTESNVSGKVRRRERTVTPRLS
DADRMAALNAIGDAAERRANSDKEEDSYPHRTRRSRRERNRNRNIEAREQNEQAAREEDM
LLAVAGILDQEGNQHFLRTGGYLPGANDALVPQQIVKQYGLRRGDAIVGAVKRRNENEGQ
QNHGRNRNRKFSQHQHLNQLVQVNTINSLDPERSALRPEFNKLTPLYPQDMLRMETTPKA
LTPRAIDLVAPIGKGQRGLIVSPPKAGKTMIMQQIAMAIAANNPKVHLMVVLVDERPEEV
TDMKRLVKGEVIASTFDRPASDHAIVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNL
AAPASGRILSGGVDAGALYPPKRFFGAARNIENGGSLTIIASALVETGSKMDEVIFEEFK
GTGNMELRLSRQLADRRIFPAIDVNASGTRREELLFSNEELKVIWQLRRALGTLDVPEAS
DFLLGRLRKTQNNAEFLVSIMRSMQASGASAS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgccggagctaaaagccttagcacagtccctggggttagaagttggaccgaag
gtgcgtagggcagaccttattgcagctattcgtgaaatgcgcggtcctgcgcgccggggg
cgaccgccgaagaacgcctcaaatgcagtgccgatgtcacagacggcagactcggcacca
acggccgcctcatctgcggcgaaggaagaagaagccggcgtgttcgatcctgctttgcgg
caaaggtacgcgcgcacatccccgcgcacagcggaaggaagcgccgcgccgggccagtcc
tccggtgaagaaatgagcagcgaacacgcgcagcaggccaacgaccggacccgacgggta
cgggagcggtcccatagctctgaggcggattcttcgtcagagacgcagccacgggagcgc
accgcacagacgagccgatatgaccgcagcacatcgcgaactggagggcgtgtcagcagt
tacgaccgcaccagtcgcttcgaccgttccgagcggaatgccgggcgtacaagccgatat
gatcgcaccagtcgctttgagcgtacagaacgctccactactgcgcaggcctctgaagga
tcgcggcgaatcgctcggacgacagacgagatcgtattgccggagcgtagcagccgcacc
gaatccaacgtcagcgggaaggtgcgccgtcgggagcgtaccgtgaccccacgactgtct
gatgcggatcgtatggcggcgttgaatgccatcggcgatgcggcagaacgtcgtgctaat
agcgataaggaagaggatagttatccacaccgaactcgccgcagtcgccgggaacgcaac
cgtaaccgcaacatcgaggcgcgggaacagaatgagcaagcagcgcgcgaggaggatatg
ctcctcgccgtggcgggcatcctcgaccaggagggaaatcagcatttcctacgcacgggc
ggctacctgccaggtgcgaacgatgcgctggttccgcagcagatcgtcaagcaatacggt
ctgcgccgcggcgacgccatcgtcggggccgtgaagcgccgcaacgagaacgaggggcag
cagaaccacggccgcaatcgcaaccgtaagttcagccagcatcagcatctgaaccagttg
gtgcaggtcaatacgatcaattccctcgatccggagcgctccgcgctgcgtccggagttc
aacaaactgacgccgctgtatccgcaggatatgctgcgcatggagacgacgccgaaggcg
ctcactccgcgtgccatcgatctggttgcacctatcggcaaggggcagcgcggacttatc
gtttcgccccccaaggccggaaagacgatgatcatgcagcagattgccatggccatcgcc
gcaaataacccgaaggtgcacctgatggtggtgctggtggacgagcgccccgaggaagtc
accgacatgaagcgtctggtcaagggtgaggtcattgcctcaacatttgaccgtcccgct
tccgaccatgcgattgtggccgagttggctatcgaacgtgccaagcgcctggtggaactg
ggacaggacgttgtcgtgctactcgattcactgacgcggctctcgcgtgcctataacctg
gcggcgcccgcttccgggcgtattctctccggcggtgttgatgccggcgcgctctacccg
ccgaagcggttcttcggcgcggcacgtaatatcgagaacggcggttctctgaccatcatc
gcttccgcgctcgttgagaccggttcgaagatggacgaggttattttcgaggagttcaag
ggaaccggcaatatggagttgcggctctcgcggcagcttgccgaccggcgtatcttcccc
gccatcgatgtcaacgcttccggaacgcgccgcgaagagttgctgttctccaacgaagaa
ctcaaggtcatctggcagttgcgtcgcgccctcggaaccctggatgttccggaggcatcg
gacttcctgctcggcaggttgcgcaagacgcagaacaacgccgagttcctggtgtcgatt
atgcgctccatgcaagcttcgggcgcgtcggcgtcgtaa
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