Actinokineospora sp. UTMC 2448: Actkin_00141
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Entry
Actkin_00141 CDS
T08397
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
actu
Actinokineospora sp. UTMC 2448
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
actu03016
]
Actkin_00141 (rtcB)
Enzymes [BR:
actu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Actkin_00141 (rtcB)
Transfer RNA biogenesis [BR:
actu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Actkin_00141 (rtcB)
Prokaryotic type
tRNA splicing ligases
Actkin_00141 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UVS76454
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All DBs
Position
139316..140416
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AA seq
366 aa
AA seq
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MAQLRNIAALPWTFKHVAVMPDVHYGKGATVGSVIAMRDAVSPAAVGVDIGCGMTAVRTS
LTADDLPASLAPLRSAIEAAVPVGFGLHRDAAFDDRDFADWDAFWARFDDLTDKTRLDRG
RAVNQMGTLGGGNHFTEVCLDTTGQVWVMLHSGSRGVGNLLAQHHIEVARGLAHNAELPD
PDLAVFLAGTPQMAAYRHDLYWAQDYARRNRAVMLRLVSDVLRAHFPTVVFDEPISVHHN
YVAEEVHFGEEVLVTRKGAIRAGRGDLGIIPGSMGTGSYIVRGLGNPDSFESASHGAGRR
MSRNKARKRFTADDLAAQTAGVECRKDSGVVDEIPAAYKDIDEVIRDQSDLVEVVAKLKQ
VVCVKG
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctgcgcaacatcgccgcgctgccgtggacgttcaagcacgtcgcggtcatg
ccggacgtgcactacggcaagggcgccacggtcggctcggtgatcgccatgcgcgacgcc
gtgtccccggccgcggtcggcgtggacatcggctgcggcatgaccgcggtgcgcacctcg
ctgaccgcggacgacctgcccgccagcctggccccgctgcgctcggcgatcgaggctgcc
gtcccggtcggcttcggcctgcaccgcgacgccgccttcgacgaccgcgacttcgccgac
tgggacgccttctgggcgcggttcgacgacctcaccgacaagacccggctcgaccgcggg
cgcgcggtgaaccagatgggcacgctcggcggcggcaaccacttcaccgaggtctgcctg
gacaccaccggccaggtctgggtcatgctgcactcggggtcccgcggcgtcgggaacctg
ctggcccagcaccacatcgaggtcgcgcgcggcctggcgcacaacgccgagctgcccgac
cccgacctcgcggtgttcctcgcgggcaccccgcagatggccgcctaccgccacgacctg
tactgggcgcaggactacgcccgccgcaaccgcgcggtcatgctgcggctggtgagcgac
gtcctgcgcgcccacttcccgaccgtggtgttcgacgagcccatctcggtgcaccacaac
tacgtcgccgaggaggtccacttcggcgaggaggtcctggtcacccgcaagggcgcgatc
cgggcgggccgcggcgacctgggcatcatccccgggtcgatgggcaccggctcctacatc
gtccgcggcctgggcaaccccgactccttcgagtccgcgtcgcacggcgcgggccgcagg
atgtcgcggaacaaggcgcgcaagcgcttcaccgccgacgacctcgccgcgcagacggcg
ggcgtcgagtgccgcaaggactccggggtggtcgacgagatcccggcggcctacaaggac
atcgacgaggtcatccgcgaccagtccgacctggtcgaggtggtggccaagctgaagcag
gtcgtctgcgtgaagggctga
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