Actinokineospora sp. UTMC 2448: Actkin_01061
Help
Entry
Actkin_01061 CDS
T08397
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
actu
Actinokineospora sp. UTMC 2448
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actu03019
]
Actkin_01061 (hrpB)
Enzymes [BR:
actu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Actkin_01061 (hrpB)
Messenger RNA biogenesis [BR:
actu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Actkin_01061 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_19
AAA_30
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UVS77351
LinkDB
All DBs
Position
1128760..1131111
Genome browser
AA seq
783 aa
AA seq
DB search
MSDLPVSAALPEIAAALAAHGTAVLVAPPGTGKTTLVPPALPGRVVVAEPRRIAARAAAA
RMAALAGEPVGASVGYAVRGDRKVSKDTRIEVVTSGLLVRRLQSDPELSGVDTVVLDECH
ERHLDADLLLALLLDARDGLRPDLRILATSATVAADRLAVLLGDAPVIQVPGVAHPVSVA
YVPPVRGERLDGVVARAVRRALSEGDGDVLVFLPGAKEIRWVAAALDVDADVVVLHGRLP
AGEQDAALRPGARRRVVLATAVAESSLTVPGVRAVVDAGQARVPRVDHGRGLSGLVTVRV
SAAVAEQRAGRAGREAPGRVYRCWPEHEQSTLPRYPEPEIRTADLTGLALELACWGTPDG
AALRWWDAPPPGPLAAARATLTALGALRDGEVTARGREMSRLGVHPRLARALVDCPGSAE
VVAVLDDDTLAAGIDLAGALRALRRGSPNTQRWRREVRRLGGRESGRDVDPALVTGLAFP
ERLARRRAVGSRSYLMAGGTAVDLPDGLGEPEWLAVASADWTGRVGVVRLAAVADEETAV
RAAPALLVEEDEVRWADGDVVARRVRRLGAIVLRERPLADPPSAAVRAAVRDGLAKEGLA
LVRMSDQAKSVRARLALLHRVLGDPWPAMDDAAVLAAAETWAAGARNAADLRGLDMASAL
RSLVPWPEAGRFDELAPERITVPSGSHVRVDYTADPPALPVKIQEVFGWTASPTVADGRV
PVVLHLLSPAGRPAAVTGDLAGFWRTGYRQVRAELRGRYPRHRWPEDPTAAEPTRHTIQR
PRR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctgcccgtcagcgccgccctcccggagatcgccgccgcgctggccgcgcac
ggcacggcggtgctcgtcgccccgcccggcacgggcaagacgacgctggtgccgcccgcg
ctgcccggccgggtggtggtcgccgagccgcgccggatcgccgcgcgggccgcggcggcg
cggatggcggcgctggcgggggagccggtcggcgcgagcgtcgggtacgcggtgcgcggc
gaccggaaggtgtcgaaggacacccggatcgaggtggtcacctccgggctgctggtgcgc
cgcctgcagtccgatccggaactgtccggggtggacaccgtcgtgctggacgagtgccac
gagcgccatctcgacgccgacctgctgctggcgctgctgctcgacgcccgcgacggcctg
cggcccgacctgcgcatcctggcgaccagcgcgaccgtcgccgcggaccgcctggccgtg
ctgctcggcgacgccccggtgatccaggtgccgggcgtcgcgcacccggtgtcggtcgcc
tacgtcccgccggtgcggggggagcggctggacggcgtcgtggcgcgggcggtgcgccgc
gcgttgtccgaaggggacggtgacgtgctggtcttcctgcccggcgccaaggagatccgg
tgggtggccgccgcgctggacgtggacgccgacgtggtcgtgctgcacggacggctgccc
gcgggcgaacaggacgccgcgctgcggcccggcgcgcggcggcgcgtggtgctggcgacg
gcggtcgccgagtccagcctgacggtgcccggggtgcgggcggtggtggacgcgggccag
gcgcgggtgccgagggtcgaccacgggcgcggcctgtccggcctggtgacggtccgggtg
tcggccgcggtggccgagcagcgcgcgggccgcgcgggacgggaggcgccgggccgggtg
taccggtgctggccggagcacgagcagtcgacgctgccgcgctaccccgagccggagatc
cgcacggccgacctgaccggcctcgcgctcgaactggcctgctggggcaccccggacggc
gccgccctgcgctggtgggacgcgccgccgccgggtccgctggccgccgcccgggccacc
ctcaccgcgctcggcgccctccgcgacggcgaggtgaccgcgcgcggccgggagatgtcc
cgcctcggcgtgcacccccgcctggcccgcgcgctggtggactgtccgggctcggcggag
gtggtcgcggtcctggacgacgacaccctcgccgcgggcatcgacctcgcaggcgccctg
cgtgcgctgcggcgcgggtcgcccaacacccagcgctggcgccgcgaggtccggcggctg
ggcgggagggagagcggcagggacgtcgacccggcgctggtgaccgggctggcgttcccg
gagcggttggcgcggcggcgggcggttgggtcgcggtcgtacctgatggcgggcggcacg
gccgtggacctgccggacgggctcggcgagccggaatggctcgcggtggcgtcggcggac
tggaccgggcgggtcggggtcgtgcggctggcggccgtggccgacgaggagaccgcggtc
cgggccgcgcccgcgctgctcgtcgaggaggacgaggtgcgctgggccgacggcgacgtg
gtcgcccggcgggtgcggcggctgggcgcgatcgtgctgcgggagcggccgctggcggac
ccgccgtcggcggcggtgcgggcggcggtgcgggatgggctggccaaggagggtcttgcc
ctggtgcggatgagcgaccaggcgaagtcggtgcgggcccgcctggcgctgctgcaccgc
gtcctcggcgacccgtggcccgcgatggacgacgccgcggtgctcgccgcggccgagacc
tgggcggcgggcgcccgcaacgcggccgacctgcgcggcctggacatggcctcggccctg
cgctcgctggtcccgtggccggaggcgggccggttcgacgagctggcgcccgagcggatc
accgtgccgtccggctcccacgtccgcgtcgactacaccgccgacccgcccgcgctgccg
gtgaagatccaggaggtgttcggctggaccgcgagccccacggtggccgacggccgcgtg
ccggtggttttgcacctgctgtcccctgcgggcaggcccgccgcggtgaccggggacctg
gccggattctggcgcacgggctaccgacaggtccgcgccgaactccgcggccgctacccc
cgccaccgctggccggaggacccgaccgccgccgagcccacccggcacacgatccaacgg
ccgaggcggtag
DBGET
integrated database retrieval system
