Actinokineospora sp. UTMC 2448: Actkin_01388
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Entry
Actkin_01388 CDS
T08397
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
actu
Actinokineospora sp. UTMC 2448
Pathway
actu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Actkin_01388 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
actu03019
]
Actkin_01388 (recQ_1)
03400 DNA repair and recombination proteins [BR:
actu03400
]
Actkin_01388 (recQ_1)
Enzymes [BR:
actu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Actkin_01388 (recQ_1)
Messenger RNA biogenesis [BR:
actu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Actkin_01388 (recQ_1)
DNA repair and recombination proteins [BR:
actu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Actkin_01388 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UVS77669
LinkDB
All DBs
Position
complement(1476226..1478265)
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AA seq
679 aa
AA seq
DB search
MDEQALRASAERRLRALAGEGARLREDQWTAIRTLVAERGRALVVQRTGWGKSAVYFVAT
ALLRELGEGPTVIVSPLLALMRNQVAAAAKAGVHAATINSANPGEWTAVQEQVTAGEVDV
LLVSPERLNNPDFRDTVLPSLTASAGMLVVDEAHCISDWGHDFRPDYRRLRTLLADLPAG
VPVLATTATANDRVVRDVSAQLGSSSVLRGPLDRESLHLAVLRLPTAQARLAWLAENLPR
FTGSGIIYTLTVAAAEELAGFLRDRGFPVAAYTGRTDPEERLRAEEDLLANRVKALVATS
ALGMGFDKPDLGFVVHVGAPQSPIAYYQQIGRAGRGVERADVVLLPGVEDKDIWSYFASL
AFPPEQVVRQVLDALTDKPISTPALEPLVELSRNRLEMVLKVLDVDGAVRRVRGGWTATG
QPWEYDAARYGRIAEARDAEQRAILEYQSTDGCRMEFLLRTLDDPHAAPCGRCDNCTGRR
WSAEVSASGVDAARERLRRPGVEIPPKKLWPTGMSALGVPLSGKIKRPLEPGRALGRLTD
IGWGNRLRELFAGPDGPVPDDVVDGCVKVLAAWDWAARPVGVVTVASGSRLARDLGERIA
GIGRLPLLGEVSVGHGARANSAQRLAGLWAGLRFDGTVAGPVLLVDDRVDTGWTMTVAGT
ALLDAGAEAVLPFALATTT
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
gtggacgagcaggcactgcgcgcatcggcggaacgccggctgcgcgccctggccggtgag
ggcgcccggctgcgcgaggaccagtggaccgcgatccggacgctggtcgccgagcgcggc
cgggcgctggtcgtgcagcgcaccgggtggggcaagtcggcggtgtacttcgtggccacg
gccctgctgcgggagctgggcgagggcccgacggtgatcgtctcgccgctgctggcgctg
atgcgcaaccaggtggccgccgcggcgaaggcgggcgtgcacgcggcgacgatcaactcg
gcgaacccgggcgagtggaccgcggtgcaggagcaggtgaccgcgggcgaggtcgatgtg
ctgctcgtctcaccggaacggctgaacaatcccgatttccgggacacggtgctgccgtcg
ctgaccgcgtcggccgggatgctggtggtcgacgaggcgcactgcatctccgactggggg
cacgacttccggccggactaccggcggctgcgcaccctgctggccgaccttcccgcgggc
gtgcccgtgctggccacgacggcgaccgccaacgaccgggtggtgcgcgacgtctccgcg
cagctggggtcgtcgtcggtgctgcgggggccgttggaccgggagagcctgcacctggcg
gtgctgcggctgccgacggcgcaggcgcgcctggcgtggctggcggagaacctgccgcgg
ttcaccggatcggggatcatctacacgctcacggtggccgccgccgaggagttggcgggc
ttcctgcgcgaccgcggtttccccgtcgccgcctacaccgggcgcaccgaccccgaggag
cggctgcgggccgaggaggacctgctggccaaccgggtcaaggcgctggtggcgacctcg
gcgctgggcatgggcttcgacaagcccgacctgggcttcgtggtgcacgtgggcgccccg
cagtcgccgatcgcgtactaccagcagatcgggcgcgcgggccgtggcgtcgagcgggcg
gacgtggtgctgctgcccggcgtcgaggacaaggacatctggtcgtacttcgcctcgctg
gcgttcccgcccgagcaggtggtgcggcaggtgctggacgcgttgacggacaagccgatc
tcgacgcccgcgctggagccgctggtcgagctgtcgcgcaaccggctggagatggtgctc
aaggtcctcgacgtggacggggccgtgcggcgggtccggggcggctggacggcgacgggc
cagccgtgggagtacgacgccgcgcggtacggccgcatcgccgaggcccgcgacgccgag
cagcgggcgatcctggagtaccagtcgaccgacggctgccgcatggagttcctgctgcgc
acgctggacgacccgcacgccgcgccgtgcggacgctgcgacaactgcaccggccgccgc
tggagcgcggaggtgtccgcctcgggcgtggacgccgcgcgcgagcggctgcgcaggccg
ggcgtggagatcccgccgaagaagctgtggcccacgggcatgtccgcgctgggcgtgccg
ctgtcggggaagatcaagcggccgctggagccgggacgggcgctgggtcggctgacggac
atcgggtggggcaaccgcctgcgtgaactgttcgccggacccgacggcccggtgccggac
gacgtcgtggacgggtgcgtgaaggtgctcgccgcgtgggactgggcggcccggccggtg
ggcgtggtgacggtggcgtccgggtcgcggctggcgcgggacctgggcgagcggatcgcg
ggcatcgggcggctgccgctgctgggcgaggtgtccgtgggccacggggcgcgggccaac
agcgcgcagcggctggcggggctgtgggccgggctgcggttcgacgggaccgtcgccggt
ccggtcctgctggtggacgaccgggtggacacggggtggacgatgaccgtggcgggcacg
gcgctgctggacgcgggcgcggaggcggtgctgccgttcgccctggcgacgacgacctga
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