Actinokineospora sp. UTMC 2448: Actkin_01690
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Entry
Actkin_01690 CDS
T08397
Symbol
rpoD_2
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
actu
Actinokineospora sp. UTMC 2448
Pathway
actu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Actkin_01690 (rpoD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actu03021
]
Actkin_01690 (rpoD_2)
Transcription machinery [BR:
actu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Actkin_01690 (rpoD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
UVS77967
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All DBs
Position
complement(1773975..1775327)
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AA seq
450 aa
AA seq
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MDRSERAYVAAARTATRRSTASASTAKTTKGAPASDEELQDAAGTKTTAKKAAKPRAPKK
AAAPKAGAKAGPKKAVDGPDGEEPEDLDNPDLSDLEEVEVDPVDETVDAVEVKEDDKPEK
DGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLY
AAERVRKAEDENEKLQPQMRRDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFL
DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK
LGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDF
IEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGV
TRERIRQIESKTMSKLRHPSRSQVLRDYLE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaccgttctgaaagggcgtacgtggcagccgcacgaaccgcaacccgacgctccacg
gcgtcggcgagcaccgccaagacgaccaagggcgcaccggcttcggacgaggagctgcag
gacgccgctgggaccaagacgacggcgaagaaggccgccaagccccgggcgcccaagaag
gccgccgcgcccaaagcgggcgcgaaggcaggccccaagaaggccgtcgacgggcccgac
ggcgaagagcccgaggacctggacaaccccgacctgtccgacctcgaggaggtcgaggtc
gacccggtcgacgagaccgtcgacgccgtcgaggtcaaggaagacgacaagcccgagaag
gacggcgacttcgtctgggacgaggaggagtccgaggcgctgcggcaggcccgcaaggac
gccgagctcaccgcctcggccgactccgtccgcgcctacctcaagcagatcggcaaggtc
gcgctgctgaacgcggaggaggaggtggagctggccaagcgcatcgaggccgggctctac
gccgccgagcgcgtgcgcaaggccgaggacgagaacgagaagctccagccgcagatgcgc
cgcgacctgcggtggatcatccgcgacggcgagcgcgccaagaaccacctgctcgaggcc
aacctgcggctcgtggtgtcgctggccaagcgctacaccggccgcggcatggcgttcctg
gacctgatccaggagggcaacctcggcctgatccgcgcggtggagaagttcgactacacc
aagggctacaagttctccacgtacgccacgtggtggatccgccaggcgatcacccgcgcg
atggccgaccaggcccgcaccatccgcatcccggtgcacatggtcgaggtcatcaacaag
ctcggccgcatccagcgcgagctgctccaggacctcgggcgcgagcccaccccggaggag
ctggccaaggaaatggacatcaccccggagaaggtgctggagatccagcagtacgcccgg
gagcccatttccctcgaccagaccatcggcgacgagggcgacagccagctcggcgacttc
atcgaggactccgaggccgtcgtcgcggtggacgcggtgtcgttcacgctgctgcaggac
cagctccagtcggtgctggcgacgctgtccgagcgcgaggcgggcgtcgtccgcctgcgc
ttcggcctcaccgacggccagccgcgcaccctggacgagatcggccaggtctacggcgtg
acgcgggagcgcatccgccagatcgagtcgaagacgatgtccaagctgcgccacccgtcg
cgctcgcaggtcctgcgcgactacctcgaatag
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