Actinokineospora sp. UTMC 2448: Actkin_05154
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Entry
Actkin_05154 CDS
T08397
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
actu
Actinokineospora sp. UTMC 2448
Pathway
actu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Actkin_05154 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actu03021
]
Actkin_05154 (rho)
03019 Messenger RNA biogenesis [BR:
actu03019
]
Actkin_05154 (rho)
Transcription machinery [BR:
actu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Actkin_05154 (rho)
Messenger RNA biogenesis [BR:
actu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Actkin_05154 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
UVS81397
LinkDB
All DBs
Position
complement(5652815..5654851)
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AA seq
678 aa
AA seq
DB search
MSNTDLLSSDSAAETPESGAKRNGGAPRKRAGLSGMVLPELRALAGQLGITGIAGMRKGD
LIAAIKERQGGSSSAPTAQELPLNGAADAPAKAEAPAKEAPAAEEAPRRESRRRRAVVRP
AGSPDKAEAAAPAEAPEQPRTADAPAASAPVEEQPRVERPQGDGQGRRERQRDRGDRADR
GDRAERGDRAERGDRQDRADRQDRGDRQDRGQDRGERPDRGDRQDRADRQDRGERQERDR
DRGRQDNRGQQQGHRVDDDDDDDERGGRRGRRFRDRRRRGGRGETGGGGGQNDTEVREDD
VLLPVAGVLDVLENYAFVRTSGYLSGPNDVYVSLSLVRKYGLRRGDAITGLVRQPREGEQ
QRQKFNPLVRVETINGLEPDGARNRPEFTKLTALYPNERLRLETEPHILTTRVIDLVMPL
GKGQRALIVSPPKAGKTSVLQSIANAITTNNPECYLMVVLVDERPEEVTDMQRSVKGEVI
ASTFDRPPGDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGG
VDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSAADTVIFEEFKGTGNAELKLDRK
IADKRTFPAVDVDQSSTRKEELLLSPDELAVTVKLRRVLHALDSQAAIELLLDRLRKSRT
NIEFLMQVAKTTPSQHED
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaataccgatctattgagcagtgacagcgctgcggagaccccggagtccggcgcc
aagcgcaacggcggggcgccgcgcaagcgggcaggcctgtccgggatggtgctgcccgag
ctgcgggccctcgcgggccagctggggatcaccggaattgcgggaatgcgcaagggcgac
ctgatcgctgccatcaaggagcggcagggtggctcgtcgtccgccccgaccgcccaggag
cttccgctcaacggggcggccgacgccccggcgaaggcggaggccccggccaaggaggcg
cccgcggcggaggaggcgccacgccgggagagccgccgtcggcgcgccgtcgtgcggccc
gcgggcagcccggacaaggccgaggccgcggccccggctgaggccccggagcagccgcgc
accgccgacgccccggccgcgtccgcgccggtcgaggagcagccgcgcgtcgagcggccg
cagggcgacggccagggccgccgcgagcggcagcgcgaccggggcgaccgcgccgaccgg
ggtgaccgcgccgagcggggtgaccgcgccgagcgcggcgaccgccaggaccgtgctgac
cggcaggaccggggcgaccggcaggaccggggccaggaccgcggcgagcggcccgaccgg
ggtgaccggcaggaccgggccgaccggcaggaccgcggcgagcgccaggagcgcgaccgc
gaccgcggccgccaggacaaccgcggccagcagcagggccaccgggtcgacgacgatgac
gacgacgacgagcgcggcggccgtcgcggtcgccggttccgggaccgccgcaggcgcggc
ggccgcggcgagaccggcggcggcggtgggcagaacgacaccgaggtccgcgaggacgac
gtgctgctgccggtcgccggtgtgctcgacgtgctggagaactacgccttcgtgcgcacg
tccggctacctgtccggccccaacgacgtctacgtgtcgctgtcgctggtccgcaagtac
ggtctgcgccgcggcgacgccatcaccggcctggtccgccagccgcgtgagggcgagcag
cagcggcagaagttcaacccgctggtgcgggtggagacgatcaacggcctggagcccgac
ggcgcgcgcaaccgcccggagttcaccaagctgacggcgctctacccgaacgagcggctg
cgcctggagaccgagccgcacatcctcaccacgcgcgtcatcgacctggtgatgccgctg
ggcaaggggcagcgcgcgctcatcgtgtcgccgccgaaggccggtaagacctcggtgttg
cagtcgatcgccaacgcgatcacgaccaacaaccccgagtgctacctgatggtcgtcctc
gtcgacgagcggcccgaggaagtcaccgacatgcagcgctcggtgaagggcgaggtcatc
gcctcgaccttcgaccgcccgccgggcgaccacaccaccgtggccgagctgtccatcgag
cgcgccaagcgcctggtggagatgggccacgacgtggtcgtgctgctggactcgatcacc
cgcctcggccgggcgtacaacctggccgccccggcgtccgggcgcatcctgtccggtggt
gtcgactcgacagcgctgtacccgccgaagcggttcctgggcgcggcgcgcaacatcgag
aacggcggctccctgacgatcatcgcgaccgcgctggtggagaccggctccgcggccgac
acggtgatcttcgaggagttcaagggcaccggcaacgccgagctcaagctggaccgcaag
atcgccgacaagcggaccttcccggccgtggacgtcgaccagtccagcacccgcaaggag
gagctgctgctctcgcccgacgagctggcggtcaccgtcaagctgcgccgggtgctgcac
gccctggacagccaggccgccatcgagctgctgctcgaccggctgcgcaagtcccgcacc
aacatcgagttcctgatgcaggtggccaagacgacgccttcgcagcacgaagactga
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