Actinokineospora sp. UTMC 2448: Actkin_05952
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Entry
Actkin_05952 CDS
T08397
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
actu
Actinokineospora sp. UTMC 2448
Pathway
actu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Actkin_05952 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actu03021
]
Actkin_05952 (rpoB)
03400 DNA repair and recombination proteins [BR:
actu03400
]
Actkin_05952 (rpoB)
Enzymes [BR:
actu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Actkin_05952 (rpoB)
Transcription machinery [BR:
actu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Actkin_05952 (rpoB)
DNA repair and recombination proteins [BR:
actu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Actkin_05952 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UVS82187
LinkDB
All DBs
Position
complement(6469301..6472798)
Genome browser
AA seq
1165 aa
AA seq
DB search
MAVSRATKATLATNSTQSEIPGAPKRVSFAKIREPLGTPDLLDLQIQSFEWFTGAEAWFQ
RRVDAGEENPVGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAP
LFVTAEFTNNTTGEIKSQTVFMGDFPVMTDKGTFIINGTERVVVSQLVRSPGVYFDTSID
KTTDKDVFSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEAIRERF
HFSETLLATLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLAKVG
RYKVNKKLGLSTPMSTGVLTEDDIVTTIEYLVRLHAGETTMTSGEGENAIEVPVEIDDID
HFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFF
GTSQLSQFMDQTNPVAGLTHKRRLSALGPGGLSRERAGMEVRDVHHSHYGRMCPIETPEG
PNIGLIGSLSSYARVNPFGFIETPYRKVVEGQVTDQVDYLTADEEDRHVIAQANAPLDDQ
GHFLEERVLVRKKGGEVEFIEPFDVDYMDVSPRQMVSVATAMIPFLEHDAANRALMGANM
QRQAVPLLRSESPLVGTGMELRAAVDGGDLVTAEKAGVVEEVSADFITIMADDGSRRTYG
LHKFRRSNQGTCINQKPIVDEGQRVEVGQVIADGPCIEEGEMALGKNLLVAIMPWEGHNY
EDAIILSQRLVQDDVLTSIHIDEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIVR
IGAEVSAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIR
VFSREDEDELPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPVEDMPFLPDGT
PVDIILNTHGVPRRMNIGQILELHLGWCAMQGWSIDPDAEWAKQLPEDLYEVEPDTNTAT
PVFDGAKENELMGLLASTRPNRDGERMVQPDGKAQLFDGRSGEPFPHPVAVGYMYILKLL
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSD
DVLGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDED
LERAAANLGINLSRNESPSVDDVVN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgcgcgaccaaggccacgcttgcgaccaactccacccagtccgagatc
ccgggagccccgaagcgggtctcgttcgcgaagatccgtgagcccctgggtacccccgac
ctgctggacctgcagatccagtcgttcgagtggttcaccggagccgaggcgtggttccag
cgccgcgtcgacgcaggcgaggagaaccccgtcggtgggctggaggaagtcctcaacgag
atctccccgatcgaggacttctccgggtcgatgtccctctccttctccgacccgcgcttc
gacgaggtcaaggcctccgtcgaggagtgcaaggacaaggacatgacctacgcggcgccg
ctgttcgtcaccgcggagttcaccaacaacaccaccggcgagatcaagagccagacggtg
ttcatgggcgacttccccgtgatgacggacaagggcaccttcatcatcaacggcaccgag
cgtgtcgtggtctcccagctggtccgctcgcccggcgtctacttcgacacctcgatcgac
aagacgaccgacaaggacgtcttcagcgtcaagatcatccccagccgcggcgcgtggctg
gagttcgacgtcgacaagcgcgacaccgtcggcgtgcgcatcgaccgcaagcgccgccag
ccggtcaccgtcctgctgaaggccctcggttggaccaccgaggccatccgcgagcggttc
cacttctccgagacgctgctggcgaccctggagaaggaccacaccgcgggcaccgacgag
gcgctgctggacatctaccgcaagctgcgcccgggcgagccgccgacgaaggagagcgcc
cagaccctcctggagaacctgttcttcaaggacaagcgctacgacctggccaaggtcggc
cgctacaaggtcaacaagaagctgggcctgagcaccccgatgtccaccggcgtgctcacc
gaggacgacatcgtcaccacgatcgagtacctggtgcgcctgcacgcgggcgagaccacc
atgacctccggcgagggcgagaacgccatcgaggtgccggtcgagatcgacgacatcgac
cacttcggcaaccggcgcctgcgcaccgtgggcgagctgatccagaaccagatccgggtc
ggcctgtcccgcatggagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggcg
atcaccccacagaccctgatcaacatccggcccgtcgtggccgcgatcaaggagttcttc
ggcacctcgcagctctcgcagttcatggaccagacgaaccccgtcgccgggctgacccac
aagcgccgcctgtcggcgctgggcccgggcggtctgtcccgtgagcgcgcgggcatggag
gtccgcgacgtccaccacagccactacggccgcatgtgcccgatcgagacgccggaaggc
ccgaacatcggcctgatcggctcgctgtcgagctacgcgcgggtcaacccgttcggcttc
atcgagaccccgtaccgcaaggtcgtggagggccaggtcaccgaccaggtcgactacctg
accgcggacgaggaggaccggcacgtcatcgcccaggccaacgcgccgctcgacgaccag
ggccacttcctggaggagcgcgtcctggtccgcaagaagggcggcgaggtcgagttcatc
gagccgttcgacgtcgactacatggacgtctcgccgcggcagatggtctccgtggccacc
gccatgatcccgttcctcgagcacgacgctgccaaccgcgcgctcatgggcgcgaacatg
cagcgccaggcggtcccgctgctgcgcagcgagtccccgctggtcggcaccggcatggag
ctgcgcgccgcggtcgacggcggcgacctggtcaccgccgagaaggcgggcgtggtcgag
gaggtctccgcggacttcatcacgatcatggccgacgacggctcccgccggacctacggc
ctgcacaagttccgccggtccaaccagggcacctgcatcaaccagaagcccatcgtcgac
gagggccagcgggtcgaggtcggccaggtcatcgccgacgggccgtgcatcgaagagggc
gagatggccctcggcaagaacctgctcgtggcgatcatgccgtgggagggccacaactac
gaggacgcgatcatcctgtcgcagcgcctcgtccaggacgacgtcctgacctcgatccac
atcgacgagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacccgg
gacatcccgaacgtctccgaggaggtgctcgccgacctcgacgagcgcggcatcgtgcgg
atcggcgccgaggtgagcgcgggcgacatcctggtcggcaaggtcaccccgaagggcgag
accgagctgaccccggaggagcgcctgctgcgcgcgatcttcggcgagaaggcccgcgag
gtgcgcgacacctcgctgaaggtcccgcacggcgagtccggcaaggtcatcggcatccgg
gtgttctcccgcgaggacgaggacgagctgcccccgggcgtcaacgagctggtgcgggtc
tacgtcgcccagaagcgcaagatccaggacggcgacaagctcgcgggccgccacggcaac
aagggcgtcatcggcaagatcctgcccgtggaggacatgccgttcctcccggacggcacg
ccggtcgacatcatcctcaacacccacggtgtgccgcgccgaatgaacatcggccagatc
ctggagctgcacctcggctggtgcgcgatgcagggctggtcgatcgatccggacgcggag
tgggccaagcagctgcccgaggacctctacgaggtggagccggacacgaacaccgcgacc
ccggtgttcgacggcgccaaggagaacgagctgatgggcctgctcgcctccacccgcccg
aaccgcgacggcgagcgcatggtgcagcccgacggcaaggcgcagctgttcgacggccgc
agcggggagccgttcccgcacccggtcgccgtgggctacatgtacatcctgaagctgctg
cacctggtggacgacaagatccacgcccggtccaccggcccgtactcgatgatcacccag
cagccgctcggtggtaaggcgcagttcggtggtcagcgcttcggcgagatggagtgctgg
gccatgcaggcctacggcgccgcctacacgctgcaggagctgctcacgatcaagtccgac
gacgtgctcggccgggtcaaggtctacgaggcgatcgtcaagggcgagaacatcccggag
ccgggcatcccggagtccttcaaggtgctcctcaaggagctgcagtcgctctgcctgaac
gtggaggtgctgtcgagcgacggcgccgccatcgagatgcgcgacagcgacgacgaggac
ctcgagcgcgccgcggccaacctgggcatcaacctctcccgcaacgagtcgccctcggtg
gacgacgtcgtgaactga
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integrated database retrieval system
