Actinomadura sp. WMMB 499: F7P10_29995
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Entry
F7P10_29995 CDS
T06213
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
actw
Actinomadura sp. WMMB 499
Pathway
actw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
actw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F7P10_29995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actw03400
]
F7P10_29995 (mfd)
Enzymes [BR:
actw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F7P10_29995 (mfd)
DNA repair and recombination proteins [BR:
actw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F7P10_29995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QFG24740
UniProt:
A0A5J6UCV8
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All DBs
Position
6600494..6604108
Genome browser
AA seq
1204 aa
AA seq
DB search
MTLSGLVDLACTDAGLRRALERVRTDHQVVAPPALWPILAAALSRRVGPPAGGTGTVLAV
TATGREAEDLTAALSSLLDPGRVAHFPAWETLPHEKLSPRSDTVGQRLAVLRRLVHPDAG
GADPTRDGEPGGKGGRLDVVVTPVRAVLQPIVSGLADLEPVRLSPGADADMDDAVRRLVE
AGYHRVDLVEKRGEIAVRGGILDVFPPTEEHPLRAEFWGDTVEEVRYFKAADQRSLEVAE
DGLWAPPCRELPLTPRVRERARALAGEHPALADILGKIADGDTVEGMEAFSPVLAESMEL
LTDLLPDGSALLVCEPERIRTRSVELVRTSQEFLEASWVNAAAGGAAPIDLGAAAFRSLE
EVRRHSRELGLPRWTVTALTPGAADETGGVAADEALFDDDAGADIDLLDLGVRPAEAYRG
DTGRVVADLKGWIAGGWRVVLVTAGHGPAERLVQLMGEEGLGARLTDVPGEPDPSIVNVT
TGLLENGFTWEPVKLAVLTETDLSGQRSSTKDARRMPSRRRGGIDPLQLRPGDYVVHEQH
GVGRYVEMVSRTVQGATREYLILEYAKSDRLFVPTDQLEELTRYVGGEAPSLHRLGGADW
QKAKSRARKAVRQIAGELIRLYSARMASPGHPFGADTPWQRELEDAFPYVETPDQLAAID
EVKADMERPVPMDRLICGDVGYGKTEIAVRAAFKAVQDGMQVAVLVPTTLLVQQHLSTFT
ERFAAFPVQVKPVSRFQTDKEIEATLEGAAAGTVDIVVGTHRILSSRTRFKKLGLVIIDE
EQRFGVEHKEELKRLRTQVDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPILTFV
GPYQEKQIAAAIRRELLREGQVFFVHNRVKSIDKVAANLARLVPEARIATAHGQMNEQQL
ERVMVDFWEKNYDVLVATTIVESGLDVPNANTLIVDRADNYGLSQLHQLRGRVGRGRERA
YAYFLYPPETPLTETAHERLATLAQHTEVGAGMYVAMKDLEIRGAGNILGAEQSGHVAGV
GFDLYVRMVGEAVRELKDGGEPEQVETKVELPVDAHLPHEYVPGERLRLDAYRRIAAITA
EDEISVVHEELKDRFGPLPVPVLNLLEVARFRAKARKAGLNDVTLQGNFVKFTPVDLPDS
RQVRLNRLYPKSILKAANETLLVPMPKTKQLGGRPLRDQELLSWASDLVDALFLGSSPAA
GAGK
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttctggacttgtcgatctggcgtgcaccgatgccgggctgcggcgcgcgctg
gagcgggtgcgcaccgaccaccaggtggtcgcgccgcccgcgctctggccgatcctggcc
gcggcgctgagccgccgcgtcggccccccggcgggcgggaccgggacggtgctggcggtg
acggcgaccggccgggaggccgaggacctgaccgccgccctgtcgagcctgctggacccg
ggccgggtggcgcacttcccggcgtgggagacgctgccgcacgagaagctgtcgccgcgc
tccgacacggtcgggcagcggctcgcggtgctgcgcaggctggtccacccggacgccggc
ggcgccgaccccacgcgggacggcgagcccggcggcaagggcgggcggctggacgtcgtg
gtcacgccggtgcgcgcggtcctgcagccgatcgtgtcgggactcgccgacctcgagccg
gtgcggctgtcgcccggcgcggacgccgacatggacgacgccgtccggcggctcgtcgag
gcgggctaccaccgggtggacctggtggagaagcgcggcgagatcgcggtgcgcggcggg
atcctggacgtgttcccgccgaccgaggagcacccgctgcgggcggagttctggggcgac
accgtcgaggaggtccgctacttcaaggcggccgaccagcggtccctggaggtcgccgag
gacgggctgtgggcgccgccgtgccgcgagctgccgctgactccgcgcgtgcgggagcgg
gcgcgggcgctcgccggcgagcacccggcgctggccgacatcctggggaagatcgccgac
ggcgacaccgtcgagggcatggaggcgttctcgcccgtcctcgccgagagcatggagttg
ctgaccgacctgctgccggacgggtcggcgctgctggtgtgcgagcccgagcggatccgg
acccgctcggtcgagctcgtccgcaccagccaggagttcctcgaggccagctgggtcaac
gcggccgcgggcggcgccgcgccgatcgacctgggcgccgccgcgttccgctcgctggag
gaggtgcggcggcacagccgggagctggggctgccgcgctggacggtcaccgcgctgacg
cccggcgccgcggacgagacgggcggggtcgcggcggacgaggcgctgttcgacgacgac
gccggcgcggacatcgacctgctcgacctcggggtgcgtccggccgaggcgtaccggggc
gacaccggccgggtcgtcgccgacctcaagggctggatcgccggcggctggcgcgtcgtg
ctggtcaccgccgggcacgggcccgcggaacggctcgtccagctgatgggcgaggagggg
ctcggcgcgcggctcaccgacgtgcccggcgagcccgacccgtcgatcgtgaacgtgacg
accgggctgctggagaacgggttcacctgggagccggtcaagctcgcggtgctcaccgag
accgacctgtcggggcagcggtcgtccaccaaggacgcgcggcggatgccgtcccggcgg
cgcggcggcatcgacccgctgcagctgcggcccggcgactacgtcgtgcacgagcagcac
ggcgtcggacggtacgtcgagatggtcagccgcaccgtgcagggcgcgacccgcgagtac
ctgatcctcgagtacgccaagagcgaccggctgttcgtcccgaccgaccagctcgaggag
ctgacccggtacgtgggcggggaggcgccgagcctgcaccggctgggcggcgccgactgg
cagaaggcgaagtcgcgggcgcgcaaggcggtccggcagatcgccggggagctgatccgg
ctgtactcggcgcggatggcgagccccgggcacccgttcggggcggacacgccgtggcag
cgggagctggaggacgcgttcccgtacgtggagacgcccgaccagctcgccgcgatcgac
gaggtcaaggcggacatggagaggcccgtcccgatggaccggctgatctgcggcgacgtc
ggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggccgtccaggacgggatg
caggtcgcggtgctggtgccgacgacgctgctggtgcagcagcacctgtcgacgttcacc
gagcggttcgcggcgttccccgtccaggtgaagccggtcagccggttccagaccgacaag
gagatcgaggcgacgctggagggcgcggcggccgggacggtcgacatcgtcgtcggcacg
caccggatcctgtcgtcgcggacccggttcaagaagctcggcctggtgatcatcgacgag
gagcagcggttcggcgtcgagcacaaggaggagctgaagcggctgcggacgcaggtggac
gtgctcgcgatgtcggcgacgccgatcccgcggacgctggagatggggctgaccggcatc
cgggagatgtcgacgatcctgaccccgccggaggagcggcacccgatcctgacgttcgtc
gggccgtaccaggagaagcagatcgcggcggcgatccgccgggagctgctgcgcgagggc
caggtgttcttcgtgcacaaccgggtgaagtcgatcgacaaggtcgcggcgaacctggcg
cggctcgtcccggaggcgcggatcgcgaccgcgcacggccagatgaacgagcagcagctc
gaacgcgtcatggtcgacttctgggagaagaactacgacgtgctggtcgcgacgacgatc
gtcgagtcgggcctggacgtccccaacgccaacaccctcatcgtcgaccgcgccgacaat
tacgggctgtcgcagctgcaccagctgcgcggccgggtcgggcgcggccgggaacgcgcg
tacgcgtacttcctgtacccgccggagacgccgctgaccgagacggcgcacgagcggctc
gcgacgctcgcgcagcacaccgaggtcggcgcgggcatgtacgtcgcgatgaaggacctg
gagatccgcggcgcgggcaacatcctcggggcggagcagtccgggcacgtcgcgggcgtc
gggttcgacctgtacgtccggatggtcggggaggcggtccgggagctgaaggacggcggc
gagccggagcaggtggagaccaaggtcgagctgccggtggacgcgcacctgccgcacgag
tacgtgccgggggagcggctccggctggacgcctaccgccgcatcgccgcgatcacggcg
gaggacgagatctccgtcgtgcacgaggagctgaaggaccggttcgggccgctgcccgtc
ccggtgctgaacctgctggaggtggcgcggttccgggcgaaggcgcgcaaggccgggctg
aacgacgtcaccctgcagggcaacttcgtcaagttcacgcccgtcgatctgcccgactcg
cggcaggtgcggctgaaccggctctacccgaagagcatcctcaaggccgcgaacgagacg
ctgctggtgccgatgccgaagaccaagcagctcggcgggcgcccgctgcgcgaccaggaa
ctgctgtcctgggcgagcgacctggtggacgccctgttcctggggtcctcgcccgccgcc
ggtgcgggcaagtag
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