Actinomycetospora sp. NBC_00405: OG774_04885
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Entry
OG774_04885 CDS
T09735
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acty
Actinomycetospora sp. NBC_00405
Pathway
acty03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OG774_04885 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acty03400
]
OG774_04885 (ligD)
Enzymes [BR:
acty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OG774_04885 (ligD)
DNA repair and recombination proteins [BR:
acty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OG774_04885 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
WUI62723
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All DBs
Position
984261..985694
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AA seq
477 aa
AA seq
DB search
MPDLSEYNAKRDPARTPEPFGEVGDTPAGERFVVQEHHARRLHYDVRFERDGVLVCWAVP
RGLPDKPGAPRLAVHTEDHPLEYLEFHGEIPAGEYGGGAMTIWDSGRYEVEKWSDTEVAV
TLHGERLEGRFVFFKPDRDGRSDHDEKDWLVQRRKSDAPAPARNKAAQSPRVAVGGRSLR
LSNLDKELYPDVPKASVIDYYARVADTILPHLAGRPLTLRRFPDGISAPSFYEKNAGAKA
PEWLRSVEVPTPGSSRGTTTANFVVVEEVATLVYLANLAVLELHVPQWRVDDDDVVQPPD
ELVFDLDPGEGTTVVDCARLAERLRDVLVADGLTPCPKTSGSKGMQVSAAVRVGDPGRTS
AYAKNVAELLARETPRSVTAIMAKDRRRGKIFVDWSQNNTAKTTVAPYSMRARAANGAPT
VSTPLTWDEVTAATEVRELTFSPADVLARVEAEGDLYAGALGEGVERPDLPEKPSAS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctctccgagtacaacgcgaagcgggatccggcgcgcacgccggagccgttc
ggggaggtcggggacacccccgccggggagcgcttcgtcgtgcaggagcaccacgcgcgc
cgcctgcactacgacgtgcgcttcgagcgcgacggcgtgctcgtgtgctgggcggtgccc
cgggggctgcccgacaagcccggagcgccccggctcgcggtgcacaccgaggaccacccg
ctggagtacctggagttccacggcgagatccccgccggcgagtacggcggcggggccatg
acgatctgggactccgggcgctacgaggtcgagaagtggtcggacaccgaggtcgcggtg
acgctgcacggcgagcggctggagggccggttcgtcttcttcaagccggaccgggacggc
aggagcgaccacgacgagaaggactggctcgtccagcgccggaagtccgacgccccggcg
ccggcgcggaacaaggcggcgcagtccccgcgggtcgcggtgggcggccggtcgctgcgc
ctgtccaacctcgacaaggagctctaccccgacgtccccaaggcgtcggtgatcgactac
tacgcccgggtcgccgacacgatcctcccccacctcgccggccggcccctgacgctgcgg
cggttccccgacggcatctccgccccgtcgttctacgagaagaacgcgggagccaaggcg
ccggagtggctgcgcagcgtcgaggtccccacccccggcagcagccggggcacgacgacg
gccaacttcgtggtggtcgaggaggtcgcgacgctggtctacctcgccaacctcgcggtg
ctcgagctgcacgtgccgcagtggcgggtcgacgacgacgacgtcgtccagccgcccgac
gagctggtgttcgacctcgaccccggtgagggcaccacggtggtcgactgcgcgcgcctg
gccgagcgcttgcgcgacgtcctcgtcgccgacgggctcacgccctgcccgaagaccagc
ggtagcaagggcatgcaggtcagcgccgcggtgcgggtcggcgacccggggcgcacgtcc
gcctacgcgaagaacgtggccgagctcctggcccgcgagaccccgcgctcggtcaccgcg
atcatggccaaagaccggcggcgcgggaagatcttcgtcgactggagccagaacaacacg
gcgaagaccaccgtcgcgccgtactcgatgcgtgcccgcgcggcgaacggcgcgccgacg
gtgtcgacgccgctgacgtgggacgaggtgaccgcggcgaccgaggtccgggagctgacc
ttctcccccgcggacgtgctggcccgcgtcgaggccgagggcgacctctacgccggggcg
ctcggcgagggtgtcgagcgccccgacctgccggagaagccgtcggcgagctga
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