Actinomycetospora sp. NBC_00405: OG774_26615
Help
Entry
OG774_26615 CDS
T09735
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acty
Actinomycetospora sp. NBC_00405
Pathway
acty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG774_26615 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acty03400
]
OG774_26615 (mfd)
Enzymes [BR:
acty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG774_26615 (mfd)
DNA repair and recombination proteins [BR:
acty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG774_26615 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
UB2H
McpB_HAMP_1st
Motif
Other DBs
NCBI-ProteinID:
WUI64873
LinkDB
All DBs
Position
5392249..5395989
Genome browser
AA seq
1246 aa
AA seq
DB search
MPAALADPGLQDVVAAAGRDVAVEGPTGLRPFLAAALAAAPGEGAAVGGAGAPVLVVTAT
EREAEELTTAVGELLSPDEVALLPSWETLPHERLSPRADTVGRRVAVMRRLAHPEAPDTP
DVPLRVVVTATRSLIQPVVPGLGDLEPVRLAEGTEYELEALTARLVDLAYARVEMVEKRG
EFAVRGGIVDLFPPTAAAPVRVEFWGDEVSELRCFSVADQRSLPDGGGGEAGTARPAEVV
APPCRELLLTEAVRARAAELAAEHTKDKALAELLSRVAEGIPSEGMESLIPALLSGEGET
PELALLPELLPSGGHVLVCHPERVITRAADLVRTGQEFLEASWLAAADGADGRAPIDLGA
SAYRDLGDVRAVAAKAGRPWWTLSSLATDPDVEDDSHTREGARVLRPGFTAVEAYRGDIA
RAAADLRGLAASGGIGVVVVPAAGTAQRAAEQLREHEVPVVLATGASGATGEQTLGLLGA
PQPGVVTVARGSLADGVTAGGTPLVIVTESDLTGSRSSGDGVVKRAPVKRRNAVDPLTLQ
TGDYVVHAQHGIGKFVEMTQRTTGTGPARTTREYLVLEYASSKRGQGAGGSVGDRLFVPT
DQLDQVSRYVGGELPTLNKLGGSDWSKTKSKARKAVRDIAASLVQLYAARQSAPGHAFAA
DTPWQREMEDAFPFTETPDQASAIDEVKADMEKAVPMDRVISGDVGYGKTEIGVRAAFKA
VQDGKQVAVLVPTTLLAQQHLQTFTDRMRNFPITVKGLSRFTPAKEVDGILRGLADGSVD
VVVGTHRLLQTGVSWKDLGLVIIDEEQRFGVEHKEHITGLRAHVDMLSMSATPIPRTLEM
SLAGIREMSTILTPPEERHPTLTYVGAQEPKQIAAAIRRELLRDGQVFYIHNRVQSIDDA
AAKLRQLVPEARIVTAHGQMPEERLERTVNEFWEREHDVLVCTTIVENGLDISNANTLIV
ERADTLGLSQLHQLRGRVGRGRERGYAYFLYPADQPLTETAHDRLATIAQHSELGAGTAV
AMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDAFKAHTDAAGDGDEPLAEVRV
DLPIDAHVPHDYVDTERLRLDVYRKIAEAGDDAALDAVREELVDRYGEPPVPVTNLLAVA
AFRQVCRRHGITEVAGQGNQIRLAPVDLPDSAQMRLKRLYPRAQYKAASRTLSLPRPVEG
QDGRGPVKMGAAPLRDLALLAWCEQLFTQLFPAPAPAPAGAATAAP
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgcggccctcgccgatcccgggctgcaggacgtcgtcgcggccgccggacgggac
gtcgccgtcgagggcccgacggggctgcggcccttcctcgccgcggcgctcgccgccgcg
ccgggcgagggcgctgcggtcggcggggccggtgccccggtcctcgtggtcaccgccacc
gagcgcgaggccgaggagctgaccaccgcggtgggcgagctgctctcccccgacgaggtc
gccctcctgccgagctgggagacgctgccccacgagcggctctccccgcgcgccgacacc
gtcggccggcgcgtcgccgtgatgcggcgcctggcccacccggaggcgccggacaccccg
gacgtcccgctgcgcgtcgtcgtcacggccacccgcagcctcatccagcccgtcgtgccc
gggctcggcgacctcgagccggtgcgcctggccgagggcaccgagtacgagctcgaggcg
ctcaccgcccgcctcgtcgacctcgcctacgcgcgggtcgagatggtggagaagcgcggc
gagttcgcggtgcgcggcggcatcgtcgacctcttcccgcccacggccgcggcgccggtg
cgcgtggagttctggggcgacgaggtctccgagctgcgctgcttctccgtcgccgaccag
cgctcgctgcccgacgggggcgggggggaggccggcactgcccggcccgccgaggtcgtc
gccccgccgtgccgcgagctgctgctcaccgaggccgtgcgcgcccgcgccgcggagctg
gccgccgagcacaccaaggacaaggccctcgccgagctgctcagccgcgtcgcggagggc
atcccgtccgagggcatggagtcgctgatccccgccctgctctccggggagggggagacg
cctgagctcgccctgctgcccgagctgctgcccagcggcgggcacgtgctggtctgccac
cccgagcgcgtcatcacccgcgccgccgacctcgtgcgcaccggccaggagttcctcgag
gcgtcgtggctcgcggccgcggacggcgccgacggccgcgcccccatcgacctcggtgcc
tcggcctaccgcgacctcggcgacgtgcgcgccgtcgccgcgaaggcggggcggccctgg
tggacgctgtcgagcctcgcgaccgaccccgacgtcgaggacgactcccacacgcgcgag
ggggcccgggtgctgcggcccgggttcaccgccgtcgaggcctaccgcggcgacatcgcc
cgcgcggccgccgacctgcgggggctcgccgcgtccggcggcatcggcgtcgtcgtcgtg
cccgccgccggcacggcccagcgggcggccgagcagctgcgcgagcacgaggtgccggtg
gtcctcgcgaccggggcgagcggagcgacgggagagcagacgttagggctcctcggcgcg
ccgcagcccggcgtggtcacggtcgcgcgcgggtcgctggccgacggcgtgacggcgggc
gggacgccgctggtgatcgtcaccgagtccgacctgacgggcagccgctcgagcggcgac
ggcgtcgtgaagcgggcgccggtgaagcggcgcaacgccgtcgaccccctcacgctccag
acgggcgactacgtcgtccacgcccagcacggcatcggcaagttcgtcgagatgacccag
cgcaccaccggcaccggcccggcgcgcaccacgcgcgagtacctggtgctggagtacgcg
agctcgaagcgcgggcagggagccggaggaagtgtgggcgaccggctgttcgtccccacg
gaccagctcgaccaggtcagccgttacgtcggcggcgagctgccgacgctgaacaagctc
ggcggctccgactggtcgaagacgaagtcgaaggcgcgcaaggcggtccgcgacatcgcg
gcgtcgctggtgcagctctacgcggcgcgccagtccgcgcccgggcacgcgttcgcggcc
gacaccccgtggcagcgggagatggaggacgcgttcccgttcaccgagacgcccgaccag
gcgtcggcgatcgacgaggtcaaggccgacatggagaaggcggtcccgatggaccgcgtc
atctccggcgacgtcggctacggcaagaccgagatcggggtgcgcgcggccttcaaggcg
gtgcaggacggcaagcaggtcgcggtgctcgtgccgacgacgctgctcgcccagcagcac
ctgcagacgttcaccgaccggatgcgcaacttcccgatcacggtgaaggggctgtcgcgg
ttcacgccggccaaggaggtcgacgggatcctccggggcctcgccgacggcagcgtcgac
gtcgtcgtcggcacccaccggctcctgcagaccggggtgtcctggaaggacctcgggctg
gtgatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagcacatcaccgggctg
cgcgcccacgtcgacatgctctcgatgtcggcgacgccgatcccgcgcaccctggagatg
agcctcgccggcatccgcgagatgtcgacgatcctcaccccgcccgaggagcggcacccg
acgctgacctacgtcggcgcccaggagcccaagcagatcgccgccgcgatccggcgtgag
ctgctccgcgacgggcaggtcttctacatccacaaccgcgtgcagtcgatcgacgacgcc
gcggccaagctgcgccagctcgtccccgaggcgcgcatcgtcaccgcgcacggccagatg
cccgaggagcgcctcgagcgcaccgtcaacgagttctgggagcgcgagcacgacgtcctg
gtctgcacgacgatcgtcgagaacggcctcgacatctccaacgccaacaccctgatcgtc
gagcgcgcggacacgctggggctctcgcagctccaccagctccgcggtcgcgtcggccgc
gggcgcgagcgggggtacgcctacttcctctacccggccgaccagccgctcaccgagacc
gcgcacgaccgcctcgccaccatcgcccagcactcggagctgggcgccggcaccgcggtc
gcgatgaaggacctcgagatccgcggggcgggcaacatcctcggcgccgagcagtccggg
cacatcgcgggcgtcgggttcgacctctacgtgcgcctggtcggcgaggccgtcgacgcg
ttcaaggcgcacaccgacgccgcgggcgacggcgacgagccgctggccgaggtgcgcgtc
gacctcccgatcgacgcccacgtgccgcacgactacgtcgacaccgagcgcctgcgcctc
gacgtctaccgcaagatcgccgaggccggcgacgacgcggccctggacgcggtgcgcgag
gagctcgtcgaccgctacggcgagcccccggtgccggtgaccaacctgctggccgtcgcc
gcgttccgccaggtctgccggcgccacgggatcaccgaggtcgcggggcagggcaaccag
atccggctcgcgccggtcgacctgcccgactccgcgcagatgcgcctgaagcgcctctac
ccgcgggcgcagtacaaggcggcgtcgcgcaccctctcgctgccccggcccgtggagggc
caggacgggcggggcccggtgaagatgggcgccgcgcccctgcgcgacctggcgctgctg
gcctggtgcgagcagctgttcacccagctcttccccgcgccggcgccggcgccggcgggc
gcggcgacggcggcgccctga
DBGET
integrated database retrieval system
